G147286


Basic Information

Item Value
gene id G147286
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 337466 ~ 339514 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU185340
cttaaattaaacacatccaCGACTAAAGCCAAAGGAGAGTCTTTAGTTGGGTTGATGCCAGAACAACGGTTACAATCTCGTTCTGGTGATTTAAGGCCCCAGGATTTTGGCAACAGAACAATCAGTCAGTCTCAAACTTTTTTGAGAAGAAAACACAGTGTCCGAGCTGTGCTCCCAGGTAAATGCTTCTTTCacagtaaaaatgaataaataaaaactcaaaacaaatggCTCAACATGCAGGACACATCCCTtcccacccaccccaccccacaaccccatctaaaaataaacctgCTGGTTCCCAACAGTACTGCCTTTACTAAGGCTCACAACACCATCGCATCCGTTGTCACATCTGGAATTCACTGCTATTGtctcacattaaaaaaatagatataaaatatCGATGAGGAAAAAGAGGTAACCTCCAGTCATCCACAGTTGGCAAGTTGGCAAGTCAAACCAAATTCCTTGGAATTACTTAGGCACCACTGACTGAAATTACAGAAACAGGACCAAGAATTAAATTtgtagtttgtttcttttgttacaAAGTTCCTTCATTCAGAATGCTattcttttcaatgtttttgttttcaggttaTTGTACTCCCCACCTCACCTCGCCTTGCCTCAAAAATCTCACATTCATTCTACCATTGATTTGAAGTTACCCTAAAACAGTACTGCCCAAATCCAATCCTCGAGGGCCCCTAGCCAACAGTTTTTATAGGTAACCTTAAATGATCAATTTCTTAAAACCTGGAACCACTTCAATGTGACCAATTAACCAGgtgatttgtgaaattaagttatgtagagatttggtaaaaataaaactaactaCCCTTTTCAGCCCCCAATGACCagaattcccttaattgaacatgttagttgcttaattgatcaatactTTCCATGTGGTCCCAGTCTGTTGAATATAGCGATTTAGGGTGACTGACAAAACTTACTgaataggggctctccaggaccgtGTTTGGGCACCACTGTCCTAAACCTGTAAAGAATGATAAGAATAATTCAAACATGTCCAACCaccaattatacatttttggttgaatgcttttttaaactgaataaatgcattactagatttaaaatgttcaaatcaatttgttattgttgttccaTTGAACATTCAGGGTGACTCCAGAGCAATGGGATCCACAGATCTCAAGATAAAGCATGTGCATTTTAGTTACAAATGGCTTTTTTTAGTACATATGGGTCTAGTATAATAAATGAGGTCATCATGAGAGTTACAAAGCAAACTAGAGAATAGAATTTTAAGTGGTGATCATCACACTCATCAGCACCCTATTTCAATTCTTAATTACTTTGTTTCTTTGCCTACTTGTATTCCTTCAGAAGCTGGAAACAAAGCCTTAGAAATCAATTGCCAATCTATTTTACTCACACTTTAAGAATGAGTGCACTATAGGCAAACTATGCAGCCATAATCTTCAAATGTACTCAGGTTTGTCAGGTCTGGATCTTTGTTACTcaggaatacagtgtaatacTGTTTTTGCTAACATTCAAGGGCTTGCATTGATTGGCACCGTGTTTGTGAACATCATGTTCCATGTCAGTCACCGTGTTCTGCTGAAActacaatacttttattttacacagcttTTGTTTGGAACTCTCTCTCCCAATTTGGATTTGGCCAACTGTAGAGCACATtcagacatttaatttgtatggcACCAATATAAATGTGAGATTCAATGTCTAACATGTTTGAGGTGCTTTGCAAATcctcagaaatgtatttgactgCCTacactgaaatgttattttggaTTGTAGGTTATACTGGATTAGTAAATTATCcaagtttattttgctttccccAAAAGCCTATGAGATTTTCTTAGCATCTGATGTGGGCGTACTCATAGGAGTTGGGCCGCTTTAAGATCAGTTGTTTCCTGAAAAACATTGTGAACCACTGCCTTTAGTTCCATAGGGAAGAATCAGATTCGGTGCCAGATGATCACcttgaaagtattttttcac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU185340 True 2049 lncRNA 0.38 1 337466 339514

Neighbor

gene id symbol gene type direction distance location
AMCG00000034 NA coding upstream 1049 317564 ~ 336417 (+)
AMCG00000035 NA coding upstream 20986 256457 ~ 316480 (+)
AMCG00000028 NA coding upstream 181659 146945 ~ 155807 (+)
AMCG00000030 NA coding upstream 190532 141021 ~ 146934 (+)
AMCG00000031 NA coding upstream 222688 114557 ~ 114778 (+)
AMCG00000038 LOC102299462,LOC102207316,LOC108269999,LOC100697238 coding downstream 52664 392178 ~ 418905 (+)
AMCG00000039 NA coding downstream 89040 428554 ~ 428826 (+)
AMCG00000040 NA coding downstream 161981 501495 ~ 569704 (+)
AMCG00000041 NA coding downstream 390388 729902 ~ 743938 (+)
AMCG00000044 NA coding downstream 404829 744343 ~ 787026 (+)
G147265 NA non-coding upstream 53425 278713 ~ 284041 (+)
G147288 NA non-coding downstream 17258 356772 ~ 356988 (+)
G147292 NA non-coding downstream 46776 386290 ~ 386953 (+)
G147313 NA non-coding downstream 131181 470695 ~ 473507 (+)
G147314 NA non-coding downstream 142600 482114 ~ 485461 (+)
G147380 NA non-coding downstream 488941 828455 ~ 1174302 (+)
AMCG00000032 NA other upstream 83025 231336 ~ 254441 (+)
AMCG00000025 NA other upstream 233104 55439 ~ 104362 (+)
AMCG00000026 NA other upstream 299691 28694 ~ 37775 (+)
G147311 NA other downstream 110138 449652 ~ 498511 (+)
G147416 NA other downstream 723571 1063085 ~ 1116950 (+)
AMCG00000073 mta1,LOC107679789,LOC107666257,LOC107600838 other downstream 1696509 2036023 ~ 2058770 (+)
G147726 LOC104962440 other downstream 2064216 2403730 ~ 2403972 (+)
AMCG00000094 NA other downstream 3351258 3690772 ~ 3699093 (+)

Expression


Co-expression Network