G147380


Basic Information

Item Value
gene id G147380
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 828455 ~ 1174302 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU185453
TTATCTGATCGTCTTCGAACCTCTGACTTTCGTTCttgattaatgaaaacattcttGGCAAAGGCAGACATTCGAATGAGTCGTCGCCGCCACGGGGGGCGTGCGATCGGCCCGAGGTTATCTAGAGTCACCAAAGCGGCCGGGGGCTGGACCCCGGATGGGTTTTTGGTCTGATAAATGCACGCATCCCCGAAGGTCAGCGCTCGTTTGCATGTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAGACTTGGAGCGATCAAAGGAACCATAACTGATTCCATGAGCCCT
>TU185454
TCATGGGAATAAGACCGCCGGATCGTTAGTCGGCATCGTTTATGGTCGGAACAACAACGGTATCTGATCGTCTTCGAACCTCCAACTTTCTTTCttgattaatgaaaacattcttGGCAAATGCTTTCGCTTTTGTCCGTCTTGCGCCGGTCCAAGAATTTCACCTCTAGCGGCACAATACAAATGCCCCTGGCCGTCCCTCTTAATCATGGCCCCAGTTCAGGAAACCCACAAAATAGAACCAGAGTCCTATTCCATTATTCCTAGCTGCAGTATTCAGGTGACCGGCCTGCTTTGAACACTCACATTTTTTCAAAGTAAACACTTCGGACCCCGCGGGACAATCAGCTAAGAGCATCGAGGGGGCGCCGAGAGGCAGGGGCTGAGACAGGCGGTAGCTCGCCTCACGGCGGACCGCCAGCTCGATCCCAAGATCCAACTATGAGCTTTTTAACTGCAGCAACTTTAATATACGCTATTGGAGCTGGAATTACTGCGGCTGCTGGCACCAGACTTGCCctacaat
>TU185455
AAGTTGTTAAGGCAGACATTCGAATGAGTCGTCGCCGCCACGGGGGGCGTGCGATCGGCCCGAGGTTATCTAGAGTCACCAAAGCGGCCGGGGGCTGGACCCCGGATGGGTTTTTGGTCTGATAAATGCACGCATCCCCGAAGGTCAGCGCTCGTTTGCATGTATTAGCTCTAGAATTGCAGCAACTTTAATATACGCTATTGGAGCTGGAATTACTGCGGCTGCTGGCACCAGACTTGCCctacaat
>TU185457
AAGTTGTTAAGGCAGACATTCGAATGAGTCGTCGCCGCCACGGGGGGCGTGCGATCGGCCCGAGGTTATCTAGAGTCACCAAAGCGGCCGGGGGCTGGACCCCGGATGGGTTTTTGGTCTGATAAATGCACGCATCCCCGAAGGTCAGCGCTCGTTTGCATGTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAGACTTGGAGCGATCAAAGGAACCATAACTGATTCCATGAGCCCT

Function

GO:

id name namespace
GO:0004055 argininosuccinate synthase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU185453 False 292 lncRNA 0.51 2 887597 913619
TU185454 True 526 lncRNA 0.50 2 1172759 1174302
TU185455 False 248 lncRNA 0.54 3 828455 1174302
TU185457 False 240 lncRNA 0.54 3 828455 913619

Neighbor

gene id symbol gene type direction distance location
AMCG00000048 NA coding upstream 11938 815941 ~ 816517 (+)
AMCG00000047 NA coding upstream 40606 787084 ~ 787849 (+)
AMCG00000044 NA coding upstream 41429 744343 ~ 787026 (+)
AMCG00000041 NA coding upstream 84517 729902 ~ 743938 (+)
AMCG00000040 NA coding upstream 258751 501495 ~ 569704 (+)
AMCG00000055 NA coding downstream 68896 1243198 ~ 1294765 (+)
AMCG00000056 NA coding downstream 187075 1361377 ~ 1383054 (+)
AMCG00000057 NA coding downstream 518850 1693152 ~ 1719606 (+)
AMCG00000066 NA coding downstream 566507 1740809 ~ 1781771 (+)
AMCG00000067 NA coding downstream 686206 1860508 ~ 1860744 (+)
G147314 NA non-coding upstream 342994 482114 ~ 485461 (+)
G147313 NA non-coding upstream 354948 470695 ~ 473507 (+)
G147292 NA non-coding upstream 441502 386290 ~ 386953 (+)
G147288 NA non-coding upstream 471467 356772 ~ 356988 (+)
G147286 NA non-coding upstream 488941 337466 ~ 339514 (+)
G147466 NA non-coding downstream 14506 1188808 ~ 1189042 (+)
G147551 NA non-coding downstream 315278 1489580 ~ 1492313 (+)
G147564 NA non-coding downstream 411755 1586057 ~ 1586324 (+)
G147565 NA non-coding downstream 413775 1588077 ~ 1588295 (+)
G147579 NA non-coding downstream 439008 1613310 ~ 1615951 (+)
G147311 NA other upstream 329944 449652 ~ 498511 (+)
AMCG00000032 NA other upstream 574014 231336 ~ 254441 (+)
AMCG00000025 NA other upstream 724093 55439 ~ 104362 (+)
AMCG00000026 NA other upstream 790680 28694 ~ 37775 (+)
AMCG00000073 mta1,LOC107679789,LOC107666257,LOC107600838 other downstream 861721 2036023 ~ 2058770 (+)
G147726 LOC104962440 other downstream 1229428 2403730 ~ 2403972 (+)
AMCG00000094 NA other downstream 2516470 3690772 ~ 3699093 (+)
AMCG00000093 srp14,LOC106610862 other downstream 2546683 3720985 ~ 3724316 (+)
G148040 NA other downstream 2585877 3760179 ~ 3760624 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_030722 zgc:158463 coding NC_007116.7 CM002889.2 824709 ~ 826807 (-)
grasscarp (Ctenopharyngodon idella) G522900 NA unknown CI01000376 null 224080 ~ 224825 (+)
tiger barb (Puntius tetrazona) G172003 zgc:158463 non-coding NW_025047683.1 JAEQBD010000028.1 2998541 ~ 3134490 (+)