G147579


Basic Information

Item Value
gene id G147579
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 1613310 ~ 1615951 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU185686
gtttgttattttttgtctgcatgctgaatgaatattttatttataaccagtttataaaaataaaatacaaaataatttgaaaacaaaacataaaacactgtaCAAGGCATTGATATGgtacaaattaaagaaacataaataattacagCTTGTATGTACAATGCAGTTCTTTCGCTAGGTACATTCTTTTTTTCCTATACATTGTTACATGACCGAAAGAAGCGTTGCTGAAGACATACATTTAATGGTGTGGAAATAACAgatgaatttaacacttttttttttagagcttTCCATGTACAAACTGGATCAATTGCACAGGCCTTTGCAATTGCAATTGCACACAGCaaaggatgaaaaataaatcagtacctctcaggcagacacacaaactgtacCAAAAGCTGTGGAGTAAACTAGAGAATGtctacattatatattttagtcaATTTGGTATTTCAGTAAGCTAGAGGTGAGAAAATCGCAGTGTCCACAATGTAGCCTTTTTTTGTCCATGTATGTGATTGATTGAGTTATACTCTAGAGGCTGTCTAGTGAAAGAGCAGTGGCTATGAATGCATTGATTACTaagacagttgtttttttttggttatttttttattttatttttattttgtattcatagaTTTTTAGTACAAACTCCCACATGCACTGGTGGGCTTTGCGAATAGACATGCCACAAAGAGAGCAACATAAACCCTATCTAGTTCTCtctagaataaataaaactaaaaatatcttCAGAGTGTGGTTAACTAGATAAGGTAcacagcagaagaaaataaaatggaagtctggcaataaagtaaaaacattactttcaacaaataattaatttaatttaactttcttCTCTCACCATTGCACAggttattgatcatttattcttcttatttttcttattataaatacttaagattattattatgattataactttttacagtatatattaaaagTTCTGAGCAGCTACACTTAAGGTTAGTTTGCTGGCTTGtgaatgtttgaaataaaaatggtacaCTACACCTGCTTCTGATGCATCCCATCTCATTGTTGAGCACTGGGTTACACTATACTGTAGATGTTAGGTGTATGCAGTGCCCATTGTGGATACTGTTCAAGTaccaaaacactgaaaatacctTTGAAGGTTTTACATTATCTACACACTTAACAAGAATGTGGACCAGGGTTCAAGCATAGTGCAATGTTGATCTGCAGAAGAGTTGGTTCATTATCAATGTGTTTAacaaggggagggggggggggtgaatagtaTCTGGGATCAGTTGATGGGTTTTCGAGCATTATTATAAGAGTAGCAAACATGCACGATAGCCTTTCCTGGACATTTTCCTAAATATGGAGGTAAagctgcattcaaataaaataaaataacaatgaaattcagcttttgaaaatagTAATAGCTTGAGTTATTTTGACAGATTGTAAAAGGTTCTTTGAGCTGTACTGATCAAGCCATCCATCCCCACTATGATGTATGCATTTTCAGGAAACACTTTTACATGATCAACCTAACATTACACTAACAAACTTGTTCAACTCAATTAGACTGAGCAATTTAGACTGAGCTACACAATCACTCCATTATGCAGACATAACAGATCAAATGTTCTATAGATCAAGGTGTTCTTCTTTTGCAAATATGCAAAGGAGATGGCAACTGAAATAGTCTGTGGTAAGAAGTGTATCAGAACACTCGTTTAGGCTGACCAGTAATATGTTTTTGGATGTTGATctcagaaacacaaaatgtaaggGTTTTTAAAAGTTTACTGCAACTAAAGGAAGCCCCAAACTACACAAACCAGGCACATTTACCATAATACATTAATCTGCttcctattttttttactgtgctTCAAATGGATTCAAACTTCAGAGGCAAAACaatctacatttaaattaagaaactAAGAGATTGACAAAAAATCTGGTAAAGGCAgtacaaatcaaaaacagaaagtAAAGGGCCCTGTAGTAGTGTAGTTCATTAAGTAatttcaacaaaaaaatatggatttcacttcttaaaataaacaatcaaatagCTGAATATCAATACTCTCGTTTTTGTAAATTACTAGAGCAATGCATTTCTCTCAATACTATGCAGGCCATGTTAGAAGCAGTGATGAATactcaaatgtttaattaaacaatgtacGTGCTTTCCCAAACTTAATTTTCACCCCAAATCCATCATTCTGCAAGGGAAAACTTGCAGGCCTTTGACAAGTCTGAATACTTCACATTTACAAGTCTTAAAACGTCACATTTACAACACCAGCTTCATTAAACCAACTGACTTTCATACCTTTATACAGTCTGTAGCCATTAGTGTCACATATGCAGAAAACTTCCACATTCAGCCAGGTTTAAAATAGTGAAATTAAGGGGAtcttgtgaaataaaaacaaaaacacaaaatcaatcaataaatgttgGCACAGCTGTAACATATTAAATTAGCTAAAAGATTACTGTATACAGTTCCAGTAATTATTCACTCCTGTGCTAGACTGTTGCAGGGAAAATCACCCCATAGAATTGTGATCCATACCTACAAATAATTATTGGAAGATGTCAACTCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU185686 True 2642 lncRNA 0.33 1 1613310 1615951

Neighbor

gene id symbol gene type direction distance location
AMCG00000056 NA coding upstream 230256 1361377 ~ 1383054 (+)
AMCG00000055 NA coding upstream 318545 1243198 ~ 1294765 (+)
AMCG00000054 NA coding upstream 448906 1139043 ~ 1164404 (+)
AMCG00000053 vps39 coding upstream 570707 991040 ~ 1042603 (+)
AMCG00000052 NA coding upstream 634766 957706 ~ 978544 (+)
AMCG00000057 NA coding downstream 77201 1693152 ~ 1719606 (+)
AMCG00000066 NA coding downstream 124858 1740809 ~ 1781771 (+)
AMCG00000067 NA coding downstream 244557 1860508 ~ 1860744 (+)
AMCG00000072 mta1,LOC102776995,LOC107741866,LOC107666257 coding downstream 397596 2013547 ~ 2034642 (+)
AMCG00000070 tmem229b,LOC107752730,LOC107708331,LOC102785226 coding downstream 498710 2114661 ~ 2115167 (+)
G147565 NA non-coding upstream 25015 1588077 ~ 1588295 (+)
G147564 NA non-coding upstream 26986 1586057 ~ 1586324 (+)
G147551 NA non-coding upstream 120997 1489580 ~ 1492313 (+)
G147466 NA non-coding upstream 424268 1188808 ~ 1189042 (+)
G147393 NA non-coding upstream 543540 904970 ~ 1069770 (+)
G147580 NA non-coding downstream 3221 1619172 ~ 1620075 (+)
G147635 crip1,LOC107600860,LOC103034058,LOC106611282 non-coding downstream 204406 1820357 ~ 1829543 (+)
G147688 NA non-coding downstream 675189 2291140 ~ 2358137 (+)
G147689 LOC107575789 non-coding downstream 685536 2301487 ~ 2368445 (+)
G147687 NA non-coding downstream 734090 2350041 ~ 2354058 (+)
G147416 NA other upstream 496360 1063085 ~ 1116950 (+)
G147311 NA other upstream 1114799 449652 ~ 498511 (+)
AMCG00000032 NA other upstream 1358869 231336 ~ 254441 (+)
AMCG00000025 NA other upstream 1508948 55439 ~ 104362 (+)
AMCG00000026 NA other upstream 1575535 28694 ~ 37775 (+)
AMCG00000073 mta1,LOC107679789,LOC107666257,LOC107600838 other downstream 420072 2036023 ~ 2058770 (+)
G147726 LOC104962440 other downstream 787779 2403730 ~ 2403972 (+)
AMCG00000094 NA other downstream 2074821 3690772 ~ 3699093 (+)
AMCG00000093 srp14,LOC106610862 other downstream 2105034 3720985 ~ 3724316 (+)
G148040 NA other downstream 2144228 3760179 ~ 3760624 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) ttbk2a ttbk2 misc NC_048583.1 CM023237.2 28759905 ~ 28796104 (+)