G147580


Basic Information

Item Value
gene id G147580
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 1619172 ~ 1620075 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU185687
ggaaaaatctatgttaagtggtctcaattttttccagagctgtatacacacacacacaaacatatataaaaagggaaaagagCAGAAATGTGGGGTGATCTACATAAGAACATTTTGGGTTTCTTTTTATCgtccttttgtcttttttcttacgtgactgtaaatgcattttttatttatttttttatctgcagGAGGAATGTGCTAGTGCTCCTGTGTGCTGGAGCAGAATGCTAGCAATCAAAACTCTGTGGGTGCAGGGATGCCTTGGTGTGTCCCCATCACTATCTGCTGAGTTTACTGGAGCACTTGCCCTCTCGGCTGCAGGCCTTGCCCCGGGGGGAGTGGAAGGAGCCGGAGCGAGCCTGTCGGCTGCAGCAGGTCTCCTGGGGGTAGGCGCGACGGGGCGGTGGAGAGCCGGAGAAGCTGGGAGGCGACCGGCTGCGACCTAGGCCCCCTCCACTTCTGTGTTCGTGGCGGGAAGGGGAGGAGCTGACAGAGCGCTGCAGGGAAGAGGAGCTACGGGGGGAGGCAGAGGCGCTGCGGTGGGGGGCAGAGGGGCTGCCTGGCGGGATCCTGGCACAGCGTGGTGAGCCCGGGCTTCCCTTGCCCTGGACTGAGCCCCGCATTTTGGGGCCGCAGCTACCGCCACCCCCGCTCTGCATAATGTGGGCCAAGCAGGAGAACAGGTCCGAGTCGCTGCTGCTGCTTGCACGGATCCGGTATCGTCGCAACCTGCAAAGACGAACACTCACTCAACAGCCTACTCTCACAGCTGGATCTGAAGaacatgcagaaaaaaatgaatagttgTATGATTCATGTCCAGTATACCCCAGAAAATAGGCTTTTGTATTCAGTGGTGGCAATTTCATACTGGACATACAATTTCataatgtttcct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU185687 True 904 lncRNA 0.53 1 1619172 1620075

Neighbor

gene id symbol gene type direction distance location
AMCG00000056 NA coding upstream 236118 1361377 ~ 1383054 (+)
AMCG00000055 NA coding upstream 324407 1243198 ~ 1294765 (+)
AMCG00000054 NA coding upstream 454768 1139043 ~ 1164404 (+)
AMCG00000053 vps39 coding upstream 576569 991040 ~ 1042603 (+)
AMCG00000052 NA coding upstream 640628 957706 ~ 978544 (+)
AMCG00000057 NA coding downstream 73077 1693152 ~ 1719606 (+)
AMCG00000066 NA coding downstream 120734 1740809 ~ 1781771 (+)
AMCG00000067 NA coding downstream 240433 1860508 ~ 1860744 (+)
AMCG00000072 mta1,LOC102776995,LOC107741866,LOC107666257 coding downstream 393472 2013547 ~ 2034642 (+)
AMCG00000070 tmem229b,LOC107752730,LOC107708331,LOC102785226 coding downstream 494586 2114661 ~ 2115167 (+)
G147579 NA non-coding upstream 3221 1613310 ~ 1615951 (+)
G147565 NA non-coding upstream 30877 1588077 ~ 1588295 (+)
G147564 NA non-coding upstream 32848 1586057 ~ 1586324 (+)
G147551 NA non-coding upstream 126859 1489580 ~ 1492313 (+)
G147466 NA non-coding upstream 430130 1188808 ~ 1189042 (+)
G147635 crip1,LOC107600860,LOC103034058,LOC106611282 non-coding downstream 200282 1820357 ~ 1829543 (+)
G147688 NA non-coding downstream 671065 2291140 ~ 2358137 (+)
G147689 LOC107575789 non-coding downstream 681412 2301487 ~ 2368445 (+)
G147687 NA non-coding downstream 729966 2350041 ~ 2354058 (+)
G147735 NA non-coding downstream 858635 2478710 ~ 2478958 (+)
G147416 NA other upstream 502222 1063085 ~ 1116950 (+)
G147311 NA other upstream 1120661 449652 ~ 498511 (+)
AMCG00000032 NA other upstream 1364731 231336 ~ 254441 (+)
AMCG00000025 NA other upstream 1514810 55439 ~ 104362 (+)
AMCG00000026 NA other upstream 1581397 28694 ~ 37775 (+)
AMCG00000073 mta1,LOC107679789,LOC107666257,LOC107600838 other downstream 415948 2036023 ~ 2058770 (+)
G147726 LOC104962440 other downstream 783655 2403730 ~ 2403972 (+)
AMCG00000094 NA other downstream 2070697 3690772 ~ 3699093 (+)
AMCG00000093 srp14,LOC106610862 other downstream 2100910 3720985 ~ 3724316 (+)
G148040 NA other downstream 2140104 3760179 ~ 3760624 (+)

Expression


Co-expression Network