G147635 (crip1,LOC107600860,LOC103034058,LOC106611282)


Basic Information

Item Value
gene id G147635
gene name crip1,LOC107600860,LOC103034058,LOC106611282
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 1820357 ~ 1829543 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU185772
gaaaaaaaaaaagttaaagctTTATTGTATACACTTCAAACCAGTTCATGGTAATCGAGATACAGCagtgttatgtttttgtaaagttGAGGgatatatttcaattacaaaaaacaaaacaaaactattgtTGGTGTTTTAgattaaaagcattacattactaggtatataaaacaaacaaaaggctTCATGAATGCcaccttctctcctcctccattACATGTTAGATGGATAACCTGCATTGTAATCTATTTGAAAGTGTGGCTTTCAGTTCCTCCACGTCCAAAtcCTTTGGGTCCAAAAAGTGCAGAGTAGCATGGATTATTACAGTAGGGTTTTCCTTCATGCTCTGCATGTGATCCTGCTGCCAAGGTCTTACCACACTTCTCACATTTCAGGCAGGGTCTGTGCCAGTCTTTTCCAAGGGAAGTCACTCTCTCAGCAAAATACACTTCTTTCGTGCACTTAGGACACTTAGGCATGTTTGCAAGTATTTTCGCTGCCTTCAACTCAGTAGAATATCCTGTGAGAAGTTATCAAGGTGCCACCCTGCTTTACTGCGGCCCACCTGCTTATTTCAACCCCTCCTCACTGCACTGTGCGCCTCGTCCTCCCGTCCCCTTGTATTTATATGTAGAAAAAGTTTGCACACGGAAGGAGATACGGGGGAGAGGCTTTTTTGTCTCTGTGCACACGACCCTGCATAAAggaatttataaaaaaaattcaaactGTGAGAGCAAGTTCATTGCCATCATAAAACGAGGCAGGCGGAAGGGGAGCGGCTGAGATGCAGCAGCTGCAGAC

Function

symbol description
crip1 Predicted to enable peptide binding activity and zinc ion binding activity. Acts upstream of or within heart contraction and heart development. Predicted to be located in cytoplasm. Orthologous to human CRIP1 (cysteine rich protein 1).

NR:

description
PREDICTED: cysteine-rich protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU185772 True 807 lncRNA 0.42 5 1820357 1829543

Neighbor

gene id symbol gene type direction distance location
AMCG00000066 NA coding upstream 38586 1740809 ~ 1781771 (+)
AMCG00000057 NA coding upstream 100751 1693152 ~ 1719606 (+)
AMCG00000056 NA coding upstream 437303 1361377 ~ 1383054 (+)
AMCG00000055 NA coding upstream 525592 1243198 ~ 1294765 (+)
AMCG00000054 NA coding upstream 655953 1139043 ~ 1164404 (+)
AMCG00000067 NA coding downstream 30965 1860508 ~ 1860744 (+)
AMCG00000072 mta1,LOC102776995,LOC107741866,LOC107666257 coding downstream 184004 2013547 ~ 2034642 (+)
AMCG00000070 tmem229b,LOC107752730,LOC107708331,LOC102785226 coding downstream 285118 2114661 ~ 2115167 (+)
AMCG00000071 NA coding downstream 299041 2128584 ~ 2135898 (+)
AMCG00000074 LOC106602716,LOC107752725 coding downstream 743236 2572779 ~ 2607991 (+)
G147580 NA non-coding upstream 200282 1619172 ~ 1620075 (+)
G147579 NA non-coding upstream 204406 1613310 ~ 1615951 (+)
G147565 NA non-coding upstream 232062 1588077 ~ 1588295 (+)
G147564 NA non-coding upstream 234033 1586057 ~ 1586324 (+)
G147551 NA non-coding upstream 328044 1489580 ~ 1492313 (+)
G147688 NA non-coding downstream 461597 2291140 ~ 2358137 (+)
G147689 LOC107575789 non-coding downstream 471944 2301487 ~ 2368445 (+)
G147687 NA non-coding downstream 520498 2350041 ~ 2354058 (+)
G147735 NA non-coding downstream 649167 2478710 ~ 2478958 (+)
G147739 NA non-coding downstream 695648 2525191 ~ 2525421 (+)
G147416 NA other upstream 703407 1063085 ~ 1116950 (+)
G147311 NA other upstream 1321846 449652 ~ 498511 (+)
AMCG00000032 NA other upstream 1565916 231336 ~ 254441 (+)
AMCG00000025 NA other upstream 1715995 55439 ~ 104362 (+)
AMCG00000026 NA other upstream 1782582 28694 ~ 37775 (+)
AMCG00000073 mta1,LOC107679789,LOC107666257,LOC107600838 other downstream 206480 2036023 ~ 2058770 (+)
G147726 LOC104962440 other downstream 574187 2403730 ~ 2403972 (+)
AMCG00000094 NA other downstream 1861229 3690772 ~ 3699093 (+)
AMCG00000093 srp14,LOC106610862 other downstream 1891442 3720985 ~ 3724316 (+)
G148040 NA other downstream 1930636 3760179 ~ 3760624 (+)

Expression


Co-expression Network