G147681


Basic Information

Item Value
gene id G147681
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 2086358 ~ 2119964 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU185827
CTgcaattgtaaaaaaacaacaacaaaataattttggaTTCAACAGAAGTAGAAACAAAATTATGTTGATTTTAACCTCTTTAACAATGGTATATAGAgcttaaatatttcattaacaaaaataGGTAAAAAGTTGGAAATAATGATACAGTACAAGAATACTAATGTGTTGTGGTTGAAGCACAATATATGATACATGCctctatttatgtattattactttgtttatttgaaaacaatacacaagaaagaagaaatgaacaaatgtattaacaaattaaaaaaagatctaTTGTACAGAATAATGGTGTTAGTCACATACACAGACCTGGATATCTCCAGAGACACAAAGTTACAGGAGTTTgtcaacataaaaacatacaaataaataaataaatggatgaataaataaataaatatatcaatgaCATTTTACAATTGAAGAGGTGTAAggttttttatttgattttaggGACATGCATAAGCGATCTATGCTTTGTCAAAAAATTgacagtttttaatgtttataatacaatataatattaaatgataataaacataatatgtAATAAACTTTCAAATCAGAAGTTTGAAAACTGACATAACAATAAGGAAAAGGTGGTGACTTCCCCACATCTCTGCTAGACTCATAGAATCACATGGAatcaaacaaaatgcttttgcaTTTACCTGAATCCACAACAGGAGACCTGAATGATGTATAGGCACACAGGGCATTTTCCCAATAGGTAAAACTGTCACACAGGGACCCTCTCCTTGAgaatttcctgttttgtttgttgttgtttttattactgaGAAAGAAAATCCTTTAATTACGAGAGCTTCGTGATCCACAGTAACGTACAGCACTTTGCATGGTTTGCATACTgattatgcaaattatttctgttaaatgtctTTGGCAGTGGatattatcattgttgttttttattattattgatactactctattattactattgctaataggctattattattattattattattattattattattattattattataaacaatgaCTGATCAGTTGATATTTTGGAGGGGATTTTGACAGCAGtctaatatatactgtatatactgcaATTGTATGTTTGGatcaatatatagatatacttACCatcatacatatttcaaattaattacaaaactcCAGTCAGACAGACAACTGACAGCACGTATCCTTCAGCTGTTTTTGTTCCatcttttgtttgtatgttcaGTGAAATACCCATTATTAAGTTAAAATTATAGCCTGAGTCATTTGAAGGATCTTACAACACagtcaaaaactaaaataaaaactttgtcATTAGACACACCCTTATAATAGTCTGTGGTTGAGTTTGAAATCATTTTGCGATTTCCCCAATGCACACTGCAGTCTGCTTgatcaatacaaaatgttttttctaaaacaCACTCTCAAATAGTTGTAATACTGTTATGTAAAGAAGAGGAGCCTATATAAGGCGTATACCAGAAAGGGTTTGGAATAGCCGGAATCAAATATAGAGCCACCAATTGCATTATTGCAATTATTGCAAGTCACTTAGGAGGGTTGAAGTATGTGATGATGCATTCCAAACCTCAGAGACAATGGGAACAAACTGCAGTACTAATTTTGTAGAGAACAGTGCCAATAAGCAACTGTTCACCTAGTTGCTGAACTTCTTTAAAGGAAGATCAGTGGtttccaaaatgtttatttccccCCAGTTTAATACAAGCACCAgccctttatttattatttatcagctTCCATCCAAACTGTCATTTCTTGGCTTTATCGTGTTCAGTCAATAACACCCTTCACAAAGCTGAGCAAGTTTCTGGATGAGATATACCAAGTCATCATTTTATCACCACTCTTCCTAAATTCTTCTGCCTCTTGAGAACATTGGTATGAACAGAATTGGACAAACTTTTCTCCTGTCCAGCCAAGGAACTGGAAAGCTgctctgtgtgtatttcataTAGATCACAAAACCCCATTCGTATTATGCATTATGCATAAAAGATACATATTCTTAAATTTAGTTGACATGCAAACGAAAAACATTGGCCATGCTGCTGCCATACCTTTCTTGTACTTTACAGGGCCGTGTTTATAGTACCACACAATTCTTTGACATTCACCcttaatttgtgtttcttcttttgatacaatacacaatactcTCTACATCtctaaatattacaaaacatttatcttatcgtgcattacaaaataatgtacatgcacatttatttatttgcttgtttgttaatattgtaatttaatgaaattattattattattattattattattatttatttcttagcagacgcccttgtccagggcgacttacaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU185827 True 2385 lncRNA 0.31 2 2086358 2119964

Neighbor

gene id symbol gene type direction distance location
AMCG00000068 LOC107741856,LOC107666262,LOC108425653,LOC107594708,LOC105898002,LOC105026081 coding downstream 182603 1888250 ~ 1903755 (-)
AMCG00000063 NA coding downstream 350257 1723650 ~ 1736101 (-)
AMCG00000061 ttbk2 coding downstream 421511 1654325 ~ 1664847 (-)
AMCG00000060 NA coding downstream 443706 1619082 ~ 1642652 (-)
AMCG00000064 NA coding downstream 475147 1585546 ~ 1611211 (-)
AMCG00000069 NA coding upstream 233036 2353000 ~ 2354076 (-)
AMCG00000087 pax9,LOC102777290,LOC107666242,LOC107679748,LOC107741874 coding upstream 687730 2807694 ~ 2819520 (-)
AMCG00000100 rps6ka5 coding upstream 900453 3020417 ~ 3050033 (-)
AMCG00000095 NA coding upstream 993155 3113119 ~ 3114141 (-)
AMCG00000098 NA coding upstream 1016066 3136030 ~ 3177119 (-)
G147645 NA non-coding downstream 234979 1850923 ~ 1851379 (-)
G147639 crip1,LOC107600860,LOC103034058,LOC106611282 non-coding downstream 257010 1820361 ~ 1829348 (-)
G147588 NA non-coding downstream 467291 1613333 ~ 1619067 (-)
G147467 NA non-coding downstream 897315 1188799 ~ 1189043 (-)
G147419 NA non-coding downstream 912056 1172316 ~ 1174302 (-)
G147704 LOC107575789 non-coding upstream 181234 2301198 ~ 2364242 (-)
G147722 NA non-coding upstream 263050 2383014 ~ 2383214 (-)
G147725 NA non-coding upstream 283434 2403398 ~ 2403618 (-)
G147782 slc25a21 non-coding upstream 670323 2790287 ~ 2793329 (-)
G147823 NA non-coding upstream 890285 3010249 ~ 3014583 (-)
AMCG00000050 NA other downstream 1145523 890112 ~ 940835 (-)
G147324 NA other downstream 1600775 484720 ~ 485583 (-)
AMCG00000037 erh,LOC100699790,LOC101174968 other downstream 1693876 387118 ~ 392482 (-)
AMCG00000084 zbtb42,LOC106582697,LOC106610857,LOC103136097,LOC102793331 other upstream 1432195 3552159 ~ 3558901 (-)
AMCG00000161 NA other upstream 2951503 5071467 ~ 5077246 (-)
G148395 NA other upstream 3218845 5338809 ~ 5342491 (-)
AMCG00000180 NA other upstream 3884222 6004186 ~ 6012637 (-)
AMCG00000177 NA other upstream 3925701 6045665 ~ 6067184 (-)

Expression


Co-expression Network