G147687


Basic Information

Item Value
gene id G147687
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 2350041 ~ 2354058 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU185834
aactcaCATATCGAAAAAACTGTAGTGATCAGCAAAGgctgtaaaaatacattcaacagTTTACTTTCTTTGTGTCAGTCCTGTTAACCTTTCTATCCTTAACTACaaggaaaaacagaacatgGAATTATTTGTCTATTatcctctttttttccttttttttccttttctttttttttttttttttacaaaaataaagaatgcattGGCTACCTGGAATGTATTCAAAGAGGCACTTAACATTGCAAACAAGGGAtccaaaaatactttttttttttttttttaaatctacctGTTGTGGTCAccgtgattttgtttttgtcattgaaTTAATTGTACTTTTCAGCTCCTTTAGCTGCAGAAAACTGAACTTTAAACCTGATGGCCCAGAATCCACAAGTAAAACTGATCAAAAACTCAGTTGTTTTGTGTAAAGTCAGCAATAAAGGACAAATAAaggacaataaattaaaaaaaaaaaaaacattcaatgcTTGTGAAGttatttataatgttgttttgcaATCTTATCTATAGGTTTTCTGATGCTTTCCAAAGCAAACCACACCAAAACaggtagatttttttaatggaactAACCGATGTTAATATTTGCAGGCAAGCCAACTGGTTTCTCTCCAACCTCAAAGTTTCCAgtcaaatgatttatttattttttaatgattattttcctGGATTGTTAAAAATCCCTTTTGTTCGATATCACCACCTCAGCAAAAAACAGAACTAGAAGCATTTGCAACACTTTAAGTGCTGAAGTTGCAACCAAAGTTTGTGTCAAAATGCTAAAATAACACTTCAAAGTAGAGTCTGCATTATAAACTGTTAGCtaaaaggttttcaaaaacAGGCGAACTGCTCAGCAAACTTGAATCGGCAGACTCCATAAGGAACTGATTTACTTTTAAGTAGGAACTCTCTTATATAAGTAACATAAGGGTGATTTTAAGGTTTTGGACCCCTCAGAAGGCATTGTATTTTAGAAATAACAGGAAAGAACGGTTATTGTCTAGGCACACTGCATGGTCTGTACATTCTATGAGCATGGCTAACAGCAACGCTCAGGCTTGTGAAAATAAGGAATAGAATTACCAAAGCAGTAACATTGATCCTAAATTTGCAGTCCAACACATacgggaaaaacaaacaaacaaacaaaaaaaaaatctaaaataaataatcaaaacgcaatgtttttgcattttttctttaaattaagttcatttttttaaaataaacaagagtgtagttacaaaaaaaaaatcattgtagtataatatattaaactgtggaaaaaaggaaacaaaaacagtctTCACAATCTTTAGATTAATACGGAAGATCATAATTtaacataaaagaaaatatattctattgTTTCATTATCCcgataaatacaaacaaaattaaaaaaaaaaaaaaaaaatgcatatgatcggcaataaatatgtttttgataaGTTAAATAAGCAGTGACAAGCAAAACTTTCCTTCTGgaaagttagttttttttccaaccgtaacaataataataataataataataataataaatcacaataataataataataatcaaaaaacaaaacaaatagaaaggaCAGGGGAGGGCGCAGAATGCTCTATAAATCTGTAATCTACGTTAGAGCAAAAATCTTAAAGCAATCTTGTTTCTAAGTGTGGGACACCCAGTTCTGCTCAGGAATGCAAAACTTACCCACAGACTTAGAACAAAATTAGCCCGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNGCGGTGGGACtgggggaggagagaaaaagagtCAGACCATTACACGATCAGAGCttgtaaagaaacattttccagTCCCAACACAATTAGTGACCAGCAACATAAGAAACTgctaaaagctttttttcttttctttttttgttttaaggcaTCACATGTTCATTGGGGTCATTGTGGTGATGGAAGAATACACTCTAGCaccaaaaaaagttttttccTGGCTGACTCCTCATCCAATCCTGTCGCTCAGTCCTAGTCCTTCCTGCAGACTTTTCTCCatttccaactttttttttcttttcacaagaCAGGGCTAAATGTAAAACTATTGcaaaaaactaaccaaaaagCAGTCCACTTGCCCTAGAGTGTACAACAGAGGCCCACTGGTCATTTTGATTTAACTTCTAGGTTGTTTTGTATTGTCCGCCCTCCCACTGGCCCACAAAGTTGGatgtagaaaaaaaagtggTAATGGCAGAAAGTAACCAGTAGAAGGCGGGAGGTTTCATACACTAAGGCACCATCTGCACTGCTACACATGTTAAGGAAAAGAAATAGCAGATGGTTCCTAGCATGAGTCACAGTCCGAAAGATATAAcgtatatatagatacacatatatatctatgtgtatgtgtgtgtgtgtatacattttaaaaaggcacttTGTAAACTGCTGGCTCCCAAACTTGATATggcagagcttttttttttggcactaCTGTACATATGAGGTGCAAGGGGAGTAACAATTGGTTGTCAATAGGATTTATATTTCCCTTCGTTCAAtgaatgtcttttttaaattgatgtgtCATTTACtcattttcatttctaaaattGAGTGTGGTTGAAACAGGAAAACGAAAAATATGAGCTGGCCGCCCTTGACATGAGGCTCCACGGGCCTAGTGCACAATCAAGGTCTCTGGACTGTGGAACACCAGGAGAGAAATGTGGGCAAGTGGACCCCTTATCTTGACAAAAACTAAGAAGTGTCCATTTCTCAGTTCGTAAACAAGgcaagagagaaggaggaggttgggggggaagggggggagtGCCAATTTCTTTAtcatccttttgtttttatttaaatttacttgatttttaattttagtcaTCAGAGATAGACAGTCTGCTGAAGATGGGGAGACGGCGACTGGTGTCCAGGATGGGTGACTCCGACCCACTTAGGCTGCCCGAACTGCTCTGGTAACCCTCCTGGTCTGAGAGAGAgtccgggggggtggggggcgacTCGAACATCTGAGGGGACTCAGACATGGGCCTGAAGAAGAAGGTGGTAGGCGATGGGGGCGCGGGGGCTGAGGGGTCAGTGGGAGCTCCCAGGCTGGGCCCGAAAAAGCTGGCCAACTCCTGGCTGGAGTAGGTGAAAGGGTTGCTGTGCCACTCGGGCAGGTCATCGGTGCTGAAGATGGGCGGAGGGGTGACTGAGGTAGGGCTGTCCTGCGGCCCACTGTTGCTGGGAAAACCAGCGAAGCTGAAGCTGTGGTGCAGCCGGGGCCGGTCTAGTTTGTTGGAcgcagagagaggagggggaccCCGGCGCTCCTCCGCGTTGTGGATAAAGTGGCAGCGCGGGCCGTAGGGGCAGAAGCCGATGGTGTGGAAAGTGCGGCACAGTTCTGTCTTGTACTTGGGGTGGCGGCTCAGGCTACGCAGCTCGTGGATACCATGCGCGAACTGGCACTTGTCGCCATACTTGCAGGCGCCGTTCTCCTCGAAAGGCCGGCACAATTCAGTCTTGTAGCGGCTTGAGTTCACCTGGccgttgttgctgttgttgctgttggtCCCGCCGTTCCCACTATTCCCATTGCCGGTCTTCTGCAGCAGCCGGTCCCCGGTCTCGGAGTACGAGCGGTCACGGAAGCGGTTCTCCTTGTTGCTGCTGCCGTTGCTGCTGCCAACTCCCCCGGTCGACAATGACTCCATCTTTAGGCTGTTGATGAACTGGTTCTGGTTGAATTTGGAGCTGGTCAAGTTAACAGAGTGTCGCCGCTGATATGCCCCCACCGAGGGGGTCCCCACCGCCTTCCTGTCCAGCAGGGGCCCATTGGGGGTGCCGATGGGGGGGTTGGGACCAGTGCAGGGAACAgttgtggggtggggggcactgaggatgttgttgttgtagttcaGCATCTTATT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU185834 True 3971 lncRNA 0.41 2 2350041 2354058

Neighbor

gene id symbol gene type direction distance location
AMCG00000071 NA coding upstream 214143 2128584 ~ 2135898 (+)
AMCG00000070 tmem229b,LOC107752730,LOC107708331,LOC102785226 coding upstream 234874 2114661 ~ 2115167 (+)
AMCG00000072 mta1,LOC102776995,LOC107741866,LOC107666257 coding upstream 315399 2013547 ~ 2034642 (+)
AMCG00000067 NA coding upstream 489297 1860508 ~ 1860744 (+)
AMCG00000066 NA coding upstream 568270 1740809 ~ 1781771 (+)
AMCG00000074 LOC106602716,LOC107752725 coding downstream 218721 2572779 ~ 2607991 (+)
AMCG00000086 slc25a21,LOC107679800 coding downstream 422609 2776667 ~ 2790487 (+)
AMCG00000088 NA coding downstream 485857 2839915 ~ 2841035 (+)
AMCG00000085 nkx2.1,nkx2-1,LOC107679765,LOC107666245,LOC107582966,LOC107578306 coding downstream 504095 2858153 ~ 2860184 (+)
AMCG00000075 NA coding downstream 722127 3076185 ~ 3107875 (+)
G147635 crip1,LOC107600860,LOC103034058,LOC106611282 non-coding upstream 520498 1820357 ~ 1829543 (+)
G147580 NA non-coding upstream 729966 1619172 ~ 1620075 (+)
G147579 NA non-coding upstream 734090 1613310 ~ 1615951 (+)
G147565 NA non-coding upstream 761746 1588077 ~ 1588295 (+)
G147564 NA non-coding upstream 763717 1586057 ~ 1586324 (+)
G147735 NA non-coding downstream 124652 2478710 ~ 2478958 (+)
G147739 NA non-coding downstream 171133 2525191 ~ 2525421 (+)
G147806 NA non-coding downstream 656025 3010083 ~ 3016145 (+)
G147807 NA non-coding downstream 666337 3020395 ~ 3021571 (+)
G147808 NA non-coding downstream 668880 3022938 ~ 3023268 (+)
AMCG00000073 mta1,LOC107679789,LOC107666257,LOC107600838 other upstream 291271 2036023 ~ 2058770 (+)
G147416 NA other upstream 1233091 1063085 ~ 1116950 (+)
G147311 NA other upstream 1851530 449652 ~ 498511 (+)
AMCG00000032 NA other upstream 2095600 231336 ~ 254441 (+)
AMCG00000025 NA other upstream 2245679 55439 ~ 104362 (+)
G147726 LOC104962440 other downstream 49672 2403730 ~ 2403972 (+)
AMCG00000094 NA other downstream 1336714 3690772 ~ 3699093 (+)
AMCG00000093 srp14,LOC106610862 other downstream 1366927 3720985 ~ 3724316 (+)
G148040 NA other downstream 1406121 3760179 ~ 3760624 (+)
AMCG00000113 NA other downstream 1758062 4112120 ~ 4193033 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_017921 zfp36l1b coding NC_007131.7 CM002904.2 9575374 ~ 9580446 (-)
grasscarp (Ctenopharyngodon idella) CI01000062_01098365_01102108 ZFP36L1, ZFP36L1A coding CI01000062 null 1098365 ~ 1103732 (+)