G147704 (LOC107575789)


Basic Information

Item Value
gene id G147704
gene name LOC107575789
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 2301198 ~ 2364242 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU185855
GCAGGgagaccttgcgggcgctgcaggatttcagtccttcacggcatagtgtgttaccaattgttttcttggtgactatggtcccagctgccttgagatcattaacaagatcctcccgtgtagttctgggctgattcctcaccgttctcatgatcattgaagcTCAAtaaggtgagatcttgcatggagccccagaccgagggagactgacagttattttgtgtttcttccatttgcaaataatcgcaccaactgttgtcaccttctcaccaagctgcttgtcttgtagcccattccagccttgtgtaggtctacaatcttgtccctgacatccttggacagctctttggtcttggccatggtggagagtttggaatctgattgattgattgattctgtggacaggtgtcttttatacaggtaacgagctgagattaggagcactccctttaagagagtgctcctaatctcagctcgttacctgtataaaagacacctgggagccagaaatcttgctgattgataggggatcaaatacttttttccctcattaacatgcaaatcaatttataacttttttgaaatgtgtttttctggatttttttgttgttattctgtctctcactgttaaaatacacctaccattaaaattatagactgatcatttctttgtcagtgggcaaacgtacaaaatcagcaggggatcaaatactttttt

Function

NR:

description
PREDICTED: receptor-type tyrosine-protein phosphatase zeta-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU185855 True 718 lncRNA 0.42 2 2301198 2364242

Neighbor

gene id symbol gene type direction distance location
AMCG00000068 LOC107741856,LOC107666262,LOC108425653,LOC107594708,LOC105898002,LOC105026081 coding downstream 397443 1888250 ~ 1903755 (-)
AMCG00000063 NA coding downstream 565097 1723650 ~ 1736101 (-)
AMCG00000061 ttbk2 coding downstream 636351 1654325 ~ 1664847 (-)
AMCG00000060 NA coding downstream 658546 1619082 ~ 1642652 (-)
AMCG00000064 NA coding downstream 689987 1585546 ~ 1611211 (-)
AMCG00000087 pax9,LOC102777290,LOC107666242,LOC107679748,LOC107741874 coding upstream 443452 2807694 ~ 2819520 (-)
AMCG00000100 rps6ka5 coding upstream 656175 3020417 ~ 3050033 (-)
AMCG00000095 NA coding upstream 748877 3113119 ~ 3114141 (-)
AMCG00000098 NA coding upstream 771788 3136030 ~ 3177119 (-)
AMCG00000096 NA coding upstream 834637 3198879 ~ 3207812 (-)
G147681 NA non-coding downstream 181234 2086358 ~ 2119964 (-)
G147645 NA non-coding downstream 449819 1850923 ~ 1851379 (-)
G147639 crip1,LOC107600860,LOC103034058,LOC106611282 non-coding downstream 471850 1820361 ~ 1829348 (-)
G147588 NA non-coding downstream 682131 1613333 ~ 1619067 (-)
G147467 NA non-coding downstream 1112155 1188799 ~ 1189043 (-)
G147722 NA non-coding upstream 18772 2383014 ~ 2383214 (-)
G147725 NA non-coding upstream 39156 2403398 ~ 2403618 (-)
G147782 slc25a21 non-coding upstream 426045 2790287 ~ 2793329 (-)
G147823 NA non-coding upstream 646007 3010249 ~ 3014583 (-)
G147921 NA non-coding upstream 942927 3307169 ~ 3308801 (-)
AMCG00000050 NA other downstream 1360363 890112 ~ 940835 (-)
G147324 NA other downstream 1815615 484720 ~ 485583 (-)
AMCG00000037 erh,LOC100699790,LOC101174968 other downstream 1908716 387118 ~ 392482 (-)
AMCG00000084 zbtb42,LOC106582697,LOC106610857,LOC103136097,LOC102793331 other upstream 1187917 3552159 ~ 3558901 (-)
AMCG00000161 NA other upstream 2707225 5071467 ~ 5077246 (-)
G148395 NA other upstream 2974567 5338809 ~ 5342491 (-)
AMCG00000180 NA other upstream 3639944 6004186 ~ 6012637 (-)
AMCG00000177 NA other upstream 3681423 6045665 ~ 6067184 (-)

Expression


Co-expression Network