G147806


Basic Information

Item Value
gene id G147806
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 3010083 ~ 3016145 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU185968
ctttttttttattttttttttatataaaggtTTCAAAACTTTAAGcccttaaaatgttttttaaaattcttttctttctccatgTTTATTAAACCCACACATAATGTTCATTTTGAACCAAGAAAAGCAAGCAATATAcgcaaacacaaacattatttaaacatgactagtttacaaaataaatccccACAAAGCATGTCAAAGTTGATACAACTCATTCAATAGCCCCCTAAACAGGTAGTTTTTCCCCAACATATCAgacaaatcacaaacacaagtACTTTACTtagcttttaaatgtctttctttaaAAGGTATGCTCTTGAAAAATACCCACATATTCttcattactttaaataaattatttgcattataaaaTCCTTTTAAACCATATAAATCCTTATACATGTCTATACCATTCACCATCATTATAGAGCAActttatatatctatacatatacgtataaatatacatacatacttatatatttgttatggCTTAGCATCTATATACAGCATTGAGGGAACAAAAGACTTTACCTTGGTTTCATATTTGTGGGACAGATCCACAAAGTTAAATATCAAATAAGTTAATACACAAAGGTTCTAGCCcagctagaaaaaaaaaatatatatatgactatCAGTACTCATTTTCCctaatatttgcatttactaTGTATAAATCTGAAGTGAATATGCCACAGTGTATACAGATCACCAAAGGTTAGGAAGATTTATGCACTCTGGCAACTTCAAGTGTTTCAACAACTACATTGGAAAGTAGGCATCTGTAAATGAATCACCCACTGACGGTGAGTTCTGCTACATGTTGTTAGGAAGTCCTCTAATGCAGAATGCCATGCGGGAGGCATATCCAAGACTTCCCAGGAATGGTCCCAGGACTGCttttattctcatttaaaatgcaattgatTCATGtacttaaataatgaattaaagcTGTTATTCACAAATCTGAAGAACTTATTTCACTGTAGACTGACGTCAACCACCGGTGTCATGTAAAAGTAGTCTATCTATCCCCCTGGAAACTGTTTTACCATGTCACATGTCAACGTTTTCCAACATTGCGTCTCAAACCCATTGTCAATATCTAAACATGAAAGTTATCTTTATCACAACAGcagttattatacatttaaaagatacatttagCCCATTCAATCGTAATAACACTGCATATAGTAATTTCTGTTTGTAACTTACAATCTATCTTTTGGCCACAATGGcatttcacaaaaacagcaacCCTTGTGTTATACTGAACATATTACAATCTAAAATATGTCCACAATGGAGCAGGGTTTTAAAAAACgacagacagaaaatacagaacCTTCACGTTAAAAAAACTGGGGTCTGGGTCATACAGCGCCATAAGCTATTGGCTGATCtcctaatatttaatttttacgTGACACCGGCACAATATGAAAATCTCCAAAACCTCAAATTGTTGCCGGTTTTGAATGGAAAGATATCATTCAAATTGGTTGTCATGCAAGTTACCAATCATCCTAGACACAAGGCcaactgcattttaaagcattgttaaaataaaacgtGATTAAGTGATTGTTAAGTGTGATTAGGTACACACGAGGAGTATTCAGAAAACAGCATATGTAAGATTTAAAGCTGAAAGACGAGAAGTGTTTTCTTCTGTGCTAAAACTGCAGTCAGCAAGCAGTCTCCCAGAAATCAAGTTATCTTTATGGGAGGGGGGACAAAATCCACCACTACTGCTGTATTGATTGCGGTGTGCCATTTCTGAGTAGCTGGGGATAAAATAATGTTACCAATAGCTTGTGTAGCTTGTAGACAACAAATTGCTCACTGAACACAACTCGGTCTCCTAATTTAGTGAAgattacagaaaacaacaatctGCTGTTGTTGCAGAAACCACACAAAGTGagcaaaaacatacatacatgtttttaaatgatactaGTAGCAGGAATGATAAAAAGCTTCAtgattaacattaatattttatctaTGTCTTTTGGTCACAACTGTAAAAAGTGCAACAATAAAACCATATATTTTCCTCTGGTGTcgaaaaaatatttagtttttactgttttttggTACAGCTTTCCAAGCCCCAGTTCTAATACAGCTTTTCTGTCCTTTGGGAAAACTGCAACCATGtactgcattttcaaaagcaaagggaaaaacacacagagctgaACGTGTGAAACGTATCAATACTAGATTAGTTCTCAATGTATAAAGAGTATTCCTGCTGCACCTCCAGACTGGCAATTTCCCATTATCGTCAAAGGATGTCTGAATTTCAGCACAGATGAGGCCAGGAGAGCAGCTGCACAAAAGATTGCAGCAGGTCTGTTCCCCTCCATTAAGAAGCAACCCTGCCCTGGGCTAATTGTTCAGTAGTGTCACACTGCtgctcattttgcatttagtacAATTAAATTCTGTCACCAAGAATAAATAGAAAAGTTGctattgtgtttatataaaatgaagcaaatacattaaacagattCATTTCTTGACACTGCAGTGACCGATTTTAGGGAGACTGCTGCAAACCGCCTGCCCATCAAAGTCTCATCAGACCAACGTCGGCTTCAAATCTGATCACGACCCGCATCACTAGAATACAGCAGTACTGTAAATATGCACGTTGAATACCTTTTGCAATTAGAGGTATCAATTTCCTGTAAAAGCTTTCAGACATTGCACGTGTCAGCTGTTgctgaaatatataaacaccaCTTAACAGAAAATGGGCTTCCTGTTGGCAATTTCTACAGACTTTTCCTTTGCTGCAGTAAAGGACAGTGAAAAGTATTCCCATAtcattcacatttcatttgatGCACATGACCTCGTTGATCTCCAAGTCATGCCTAAAACGGACAGTGCTAGATTTGTTTAGTAATTCGTTCAAACATTTCCATGAAAAGTTGAAACCTCAGAGGCACAAGGGAGGCTACAGTCCAGGAGGTTCGATCACACTGATTTAGTTTCCGAACGTCAAAAATCACACGACCTTGAAAGAAACATACAGGTAACTATCTCACAGGTATAAAGGTctctttttacagttttaaagtcAACTCACAATCCAGAACAAAAACTCACATTTACCAGATTCAAACAAATTGCACCGTAACCAATGAGGACATTTACAATAGTCAAAACTACCAATATTTAGGACTTAAAACTGAGTTTTTCCACAAAGATGAGCTTTAGTGCCATTTTCAGCACTGCAAATTCAAAACCCAAGAAACTTAATTCCATTTTTGGACAGGTCTATGGAAAAGGCTGACAACCCCATGTAATCTGAACTCTTATTACTGCTGTGaggtttctttttaaagaactggaaaataaattatcattaacATAACTATAATTAGCAGGGGATATCTGCATTTAAACCAGTGTGCCATACACACTGTAAACTACAGTGTTGTGACCTTGGATGGAACATTAATCTATGCCTTTCTACTACTGTTCCTTATCATATCTTTTTAGAAAGACATCTTTCCTCCAATAAAGACAACTTTCATCTTTGTAGGAGATGCCAAGACATCCTGAAGAGTATGATTACAGATTGCAATGCATGCGTCGGCATGTGCCATCTTTAGAGAAAAACGACACGATTTAATTTCACCTACTCCTGCAACCCATTgtcaacaacataaaaacaaaacaaaaataaaacaactgtacGACACACTGGTTTGAAGCAAATTTCTGAACCGGAGAGACTTCTCGTTTTCAGGAGTGGCAACCAGTCAGTTTGCGTAGAAAGTGTCAAAAATGGAATTCACATTTCGGCTTGAACACAATTCAAAGCACTTACTttatacaacaaaaaacaacatcactCACAGACATCTAGGTCATATTCATGACAAAACTTGAAATCACAAGAAGAGAAAGCCTAGTGCACACAAGCCTCTGTGGTCATCAGGTTATTTCACAGAGGCTTCATTGAATAGTATCTTATGGAGAGGTCCAGTGGTTAAATAAAGAGAACCTCCGCACCAGTCAGCTCTGCCTTgccatattttgaaaaacattcgCCCTTAAAAACAATTATCTGAAAACTCAGGACTATGCTCAATAATACCCTTCACTCTGGAATACTtgattgaaaacagaaaaatacctttaattttgttaaagGCTTTTTTCAGCACAGTATGTTTCAGTCAAAaaactagatttaaaaaaacaaaacaaaaaaaactgtacacCTCAGATGCTTCAATGCATTGCAAAGCAGAAAATCTGAAGATGTGTCTGTCTTACAGCTTTTTACCATTTACTTATTTAGAGACACTGGAATACTCCATAAAGAAATACGGTCCAAACTGCCACCTGACAGCATCTCTAAAGATGCATCTCTACATTATGCATAGTACTGTTGTAACTCATATATATAGCTGCCTTAAAGTTGAAAAATTAGAACATGTATCTAATTAAATGCCACTGTTTTTATTCAAAGTTATCCTGAATACATctatattatacaaatgtataaaacgTTAGACTCGAGTTacctttattaatatattatatatatatatatatatatatatatatatatagtcatgttttttccccaaaggcTTTAACAAGGTACTAGCATCTAACTAGCCCCtggacaaatgtattttctcacgGCATACTGTAATTGCTGTGTTTCTATTaaagctttacattttcaaatttaaagaaGGTAAAGCTAGGAAGGAACATACAATTCTGATTGTCTGCAGCTACATTTCCATTGGTtcaatttacaatatatatgaaaacaacacaaacaattcCAGCTAAGCAACTAAGGTGCAATGATTTCATTGGATGCATCCACACTGAAAGATTAGTCTAAAATGTCTGCATACCAAAATCCTTATTGCCCACAATTACATTTCCAAGACAATTCAGaagacaacaaaaatatatagatatatattttgcagtAAAGTAgctatgaagaagaaaaacatagtTCACAACTAGGTTTAAAAAGTCAGGTCAGGTTAATTGTGCGTTTCTCACCAGCTTTTTGGAAAAGCAAGGACATTAAGAAGTATCCCTAAATTCTACTGTCAGATTCTCTTCCAATAATCCTAAAAAGGGCttacattttctacagcaacacaggttatttaaatatttaatttttgcGTCACAAAAAGGTTCATTTAAGGACACTGAAGCCCAGTGGATTTGCATATTCTATTATTACTatacaaatacagcaaatatGAGAAATTGGATATGCCAGCTCTGGTAAAGGTAGAATTGTATAATACATACGGCAGAGATCACAGAAACTAACCCTTATTCTTTAATGATCGAGAGCAATTTTTATCTTACTGTTGTAttcatacaaatatgaatgtgagaattaaatatgacttttgaaatgcagaataacaaaaggtttttacttttatgtatCTACATTATCTATACTTTACACTATAGCAGACTGCAATGCAGCACCATATACGTCTGCACTGCAAAACCTCTCATGATATACTGCACATCAGTATAGAAGGACATAACTAACATTGCCCTggtaaaaagaacaacaacaaaaaaagggcTACAAAAAGAGAATCCACATGGGGAAAAAGGGAAATGAAAGGAGAAACTACTCTTCTCAAGGCATCTCGCTCCACTTGAAAAACAGGATCTTTCTTTGAAACGCCTGGCACCCATTTCAGGTTAAATCCTGAAAACTATCCGAAAGAAACTGTATATATTCCCACCCCGGCTCAAGGAGTCATATTTCTTCAACGTACATGACAAAATTAGCAATATTACCATAAGCTCTGGGAGTTCCTTGTGTAATTAAAG
>TU185970
CTGTTGTCCCTCACCCACTGATCCACACTCATGTATGCGTGCTCACAATTTTTCTCCAAGCTTTCAACACAATTCGCAACATCATGTCAACATCTttgataaaaccaaaaacacacactgcaaagcCAACTCTTGCATACTTAGATATTTTTATTCAACATCAGACAGGGaacagttctttttttttattttttttttatataaaggtTTCAAAACTTTAAGcccttaaaatgttttttaaaattcttttctttctccatgTTTATTAAACCCACACATAATGTTCATTTTGAACCAAGAAAAGCAAGCAATATAcgcaaacacaaacattatttaaacatgactagtttacaaaataaatccccACAAAGCATGTCAAAGTTGATACAACTCATTCAATAGCCCCCTAAACAGGTAGTTTTTCCCCAACATATCAgacaaatcacaaacacaagtACTTTACTtagcttttaaatgtctttctttaaAAGGTATGCTCTTGAAAAATACCCACATATTCttcattactttaaataaattatttgcattataaaaTCCTTTTAAACCATATAAATCCTTATACATGTCTATACCATTCACCATCATTATAGAGCAActttatatatctatacatatacgtataaatatacatacatacttatatatttgttatggCTTAGCATCTATATACAGCATTGAGGGAACAAAAGACTTTACCTTGGTTTCATATTTGTGGGACAGATCCACAAAGTTAAATATCAAATAAGTTAATACACAAAGGTTCTAGCCcagctagaaaaaaaaaatatatatatgactatCAGTACTCATTTTCCctaatatttgcatttactaTGTATAAATCTGAAGTGAATATGCCACAGTGTATACAGATCACCAAAGGTTAGGAAGATTTATGCACTCTGGCAACTTCAAGTGTTTCAACAACTACATTGGAAAGTAGGCATCTGTAAATGAATCACCCACTGACGGTGAGTTCTGCTACATGTTGTTAGGAAGTCCTCTAATGCAGAATGCCATGCGGGAGGCATATCCAAGACTTCCCAGGAATGGTCCCAGGACTGCttttattctcatttaaaatgcaattgatTCATGtacttaaataatgaattaaagcTGTTATTCACAAATCTGAAGAACTTATTTCACTGTAGACTGACGTCAACCACCGGTGTCATGTAAAAGTAGTCTATCTATCCCCCTGGAAACTGTTTTACCATGTCACATGTCAACGTTTTCCAACATTGCGTCTCAAACCCATTGTCAATATCTAAACATGAAAGTTATCTTTATCACAACAGcagttattatacatttaaaagatacatttagCCCATTCAATCGTAATAACACTGCATATAGTAATTTCTGTTTGTAACTTACAATCTATCTTTTGGCCACAATGGcatttcacaaaaacagcaacCCTTGTGTTATACTGAACATATTACAATCTAAAATATGTCCACAATGGAGCAGGGTTTTAAAAAACgacagacagaaaatacagaacCTTCACGTTAAAAAAACTGGGGTCTGGGTCATACAGCGCCATAAGCTATTGGCTGATCtcctaatatttaatttttacgTGACACCGGCACAATATGAAAATCTCCAAAACCTCAAATTGTTGCCGGTTTTGAATGGAAAGATATCATTCAAATTGGTTGTCATGCAAGTTACCAATCATCCTAGACACAAGGCcaactgcattttaaagcattgttaaaataaaacgtGATTAAGTGATTGTTAAGTGTGATTAGGTACACACGAGGAGTATTCAGAAAACAGCATATGTAAGATTTAAAGCTGAAAGACGAGAAGTGTTTTCTTCTGTGCTAAAACTGCAGTCAGCAAGCAGTCTCCCAGAAATCAAGTTATCTTTATGGGAGGGGGGACAAAATCCACCACTACTGCTGTATTGATTGCGGTGTGCCATTTCTGAGTAGCTGGGGATAAAATAATGTTACCAATAGCTTGTGTAGCTTGTAGACAACAAATTGCTCACTGAACACAACTCGGTCTCCTAATTTAGTGAAgattacagaaaacaacaatctGCTGTTGTTGCAGAAACCACACAAAGTGagcaaaaacatacatacatgtttttaaatgatactaGTAGCAGGAATGATAAAAAGCTTCAtgattaacattaatattttatctaTGTCTTTTGGTCACAACTGTAAAAAGTGCAACAATAAAACCATATATTTTCCTCTGGTGTcgaaaaaatatttagtttttactgttttttggTACAGCTTTCCAAGCCCCAGTTCTAATACAGCTTTTCTGTCCTTTGGGAAAACTGCAACCATGtactgcattttcaaaagcaaagggaaaaacacacagagctgaACGTGTGAAACGTATCAATACTAGATTAGTTCTCAATGTATAAAGAGTATTCCTGCTGCACCTCCAGACTGGCAATTTCCCATTATCGTCAAAGGATGTCTGAATTTCAGCACAGATGAGGCCAGGAGAGCAGCTGCACAAAAGATTGCAGCAGGTCTGTTCCCCTCCATTAAGAAGCAACCCTGCCCTGGGCTAATTGTTCAGTAGTGTCACACTGCtgctcattttgcatttagtacAATTAAATTCTGTCACCAAGAATAAATAGAAAAGTTGctattgtgtttatataaaatgaagcaaatacattaaacagattCATTTCTTGACACTGCAGTGACCGATTTTAGGGAGACTGCTGCAAACCGCCTGCCCATCAAAGTCTCATCAGACCAACGTCGGCTTCAAATCTGATCACGACCCGCATCACTAGAATACAGCAGTACTGTAAATATGCACGTTGAATACCTTTTGCAATTAGAGGTATCAATTTCCTGTAAAAGCTTTCAGACATTGCACGTGTCAGCTGTTgctgaaatatataaacaccaCTTAACAGAAAATGGGCTTCCTGTTGGCAATTTCTACAGACTTTTCCTTTGCTGCAGTAAAGGACAGTGAAAAGTATTCCCATAtcattcacatttcatttgatGCACATGACCTCGTTGATCTCCAAGTCATGCCTAAAACGGACAGTGCTAGATTTGTTTAGTAATTCGTTCAAACATTTCCATGAAAAGTTGAAACCTCAGAGGCACAAGGGAGGCTACAGTCCAGGAGGTTCGATCACACTGATTTAGTTTCCGAACGTCAAAAATCACACGACCTTGAAAGAAACATACAGGTAACTATCTCACAGGTATAAAGGTctctttttacagttttaaagtcAACTCACAATCCAGAACAAAAACTCACATTTACCAGATTCAAACAAATTGCACCGTAACCAATGAGGACATTTACAATAGTCAAAACTACCAATATTTAGGACTTAAAACTGAGTTTTTCCACAAAGATGAGCTTTAGTGCCATTTTCAGCACTGCAAATTCAAAACCCAAGAAACTTAATTCCATTTTTGGACAGGTCTATGGAAAAGGCTGACAACCCCATGTAATCTGAACTCTTATTACTGCTGTGaggtttctttttaaagaactggaaaataaattatcattaacATAACTATAATTAGCAGGGGATATCTGCATTTAAACCAGTGTGCCATACACACTGTAAACTACAGTGTTGTGACCTTGGATGGAACATTAATCTATGCCTTTCTACTACTGTTCCTTATCATATCTTTTTAGAAAGACATCTTTCCTCCAATAAAGACAACTTTCATCTTTGTAGGAGATGCCAAGACATCCTGAAGAGTATGATTACAGATTGCAATGCATGCGTCGGCATGTGCCATCTTTAGAGAAAAACGACACGATTTAATTTCACCTACTCCTGCAACCCATTgtcaacaacataaaaacaaaacaaaaataaaacaactgtacGACACACTGGTTTGAAGCAAATTTCTGAACCGGAGAGACTTCTCGTTTTCAGGAGTGGCAACCAGTCAGTTTGCGTAGAAAGTGTCAAAAATGGAATTCACATTTCGGCTTGAACACAATTCAAAGCACTTACTttatacaacaaaaaacaacatcactCACAGACATCTAGGTCATATTCATGACAAAACTTGAAATCACAAGAAGAGAAAGCCTAGTGCACACAAGCCTCTGTGGTCATCAGGTTATTTCACAGAGGCTTCATTGAATAGTATCTTATGGAGAGGTCCAGTGGTTAAATAAAGAGAACCTCCGCACCAGTCAGCTCTGCCTTgccatattttgaaaaacattcgCCCTTAAAAACAATTATCTGAAAACTCAGGACTATGCTCAATAATACCCTTCACTCTGGAATACTtgattgaaaacagaaaaatacctttaattttgttaaagGCTTTTTTCAGCACAGTATGTTTCAGTCAAAaaactagatttaaaaaaacaaaacaaaaaaaactgtacacCTCAGATGCTTCAATGCATTGCAAAGCAGAAAATCTGAAGATGTGTCTGTCTTACAGCTTTTTACCATTTACTTATTTAGAGACACTGGAATACTCCATAAAGAAATACGGTCCAAACTGCCACCTGACAGCATCTCTAAAGATGCATCTCTACATTATGCATAGTACTGTTGTAACTCATATATATAGCTGCCTTAAAGTTGAAAAATTAGAACATGTATCTAATTAAATGCCACTGTTTTTATTCAAAGTTATCCTGAATACATctatattatacaaatgtataaaacgT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU185968 True 5886 lncRNA 0.35 1 3010260 3016145
TU185970 False 4737 lncRNA 0.36 1 3010083 3014819

Neighbor

gene id symbol gene type direction distance location
AMCG00000085 nkx2.1,nkx2-1,LOC107679765,LOC107666245,LOC107582966,LOC107578306 coding upstream 149899 2858153 ~ 2860184 (+)
AMCG00000088 NA coding upstream 169048 2839915 ~ 2841035 (+)
AMCG00000086 slc25a21,LOC107679800 coding upstream 219596 2776667 ~ 2790487 (+)
AMCG00000074 LOC106602716,LOC107752725 coding upstream 402092 2572779 ~ 2607991 (+)
AMCG00000071 NA coding upstream 874185 2128584 ~ 2135898 (+)
AMCG00000075 NA coding downstream 60040 3076185 ~ 3107875 (+)
AMCG00000078 NA coding downstream 387214 3403359 ~ 3416557 (+)
AMCG00000079 NA coding downstream 427368 3443513 ~ 3464306 (+)
AMCG00000081 NA coding downstream 448218 3464363 ~ 3469964 (+)
AMCG00000082 adssl1,pura1 coding downstream 507455 3523600 ~ 3536734 (+)
G147739 NA non-coding upstream 484662 2525191 ~ 2525421 (+)
G147735 NA non-coding upstream 531125 2478710 ~ 2478958 (+)
G147689 LOC107575789 non-coding upstream 641638 2301487 ~ 2368445 (+)
G147688 NA non-coding upstream 651946 2291140 ~ 2358137 (+)
G147687 NA non-coding upstream 656025 2350041 ~ 2354058 (+)
G147807 NA non-coding downstream 4250 3020395 ~ 3021571 (+)
G147808 NA non-coding downstream 6793 3022938 ~ 3023268 (+)
G147809 NA non-coding downstream 9233 3025378 ~ 3025789 (+)
G147814 NA non-coding downstream 18874 3035019 ~ 3036346 (+)
G147842 NA non-coding downstream 119775 3135920 ~ 3139189 (+)
G147726 LOC104962440 other upstream 606111 2403730 ~ 2403972 (+)
AMCG00000073 mta1,LOC107679789,LOC107666257,LOC107600838 other upstream 951313 2036023 ~ 2058770 (+)
G147416 NA other upstream 1893133 1063085 ~ 1116950 (+)
G147311 NA other upstream 2511572 449652 ~ 498511 (+)
AMCG00000032 NA other upstream 2755642 231336 ~ 254441 (+)
AMCG00000094 NA other downstream 674627 3690772 ~ 3699093 (+)
AMCG00000093 srp14,LOC106610862 other downstream 704840 3720985 ~ 3724316 (+)
G148040 NA other downstream 744034 3760179 ~ 3760624 (+)
AMCG00000113 NA other downstream 1095975 4112120 ~ 4193033 (+)
AMCG00000136 btbd7 other downstream 2072294 5088439 ~ 5161195 (+)

Expression


Co-expression Network