G147842


Basic Information

Item Value
gene id G147842
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 3135920 ~ 3139189 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU186011
TtcatttagatttgtttattacaaagacttcaattgaataaaaaaaacatcctttcctaatataaatttgaaaaacaagaaaacaaataaaaagcttgCAGAATGACATTGTACAAAAtcATTCCGTAGtgtacaaaaatattttcaatccATCTATCCAATAATGACATGGAGCATTCCTCTGCATTTGTAAAGTACCTTAGCACATTACTTATGAGTTTCTTGAGTGTCTGTACATTCTTTATGTTCATGCTAAAAAGCTTTCCAAGCACATTCTCCAACTCCTCCTACAGGCCTCTGATGGCCAAGGGGACAACTTCAGCTTAATGGAGACTAATGATTCAGGGTTGCACCAGAAAGAAAGCATCCAAGGAACACTAACAGTTTATAGCTCAATAATTGTTTGGAGTATATAGAGCTTTTCAGGTTGCCCTTCTTCCAGTTACTGCCCCAAAATGGGTCATGCAACTTGACTTTACACAGGGCCCTTTAAGAGCAAACAGTAGGGTTTGTCCAATTCCCTCACAACCCCTCCATTCCTGTGTCTCAGGGCCCTCGCACAGATTCCAGTGTgtctgctccattttgtgctcaGTGTTGTGTCGCATACACACTGTTCTGTCCAGGCTTcttgaatgaatgaaaagtAATAATGCAGCATGTTCTGGTACGTGAAAAGAGATCTAGCcctggaatttaaataaatattgatttccaATGGACTATCTTCTTGAGTAATGTGTTTTaggagaaggaaaaataagtaattaaataaatactaatgaATAACTGGGGATGTAGGGAAGAGTTCAtccttattttgtttctttaatttaaaggaataataaaaacaatccagTGTTGAGACTTATTACTAATACACTACTTGTCAGTACACGTAGTTTGCTTGGGGACACAACTTGAAGtaactaacacacacacctcctattgtccattttaaatgctttaagaCTTTAAGACATTAACATTGTATTAACAGACATAAAAAGACAGCTTTATTTACAATAGTCTTAATTATCCAGTGTCATTAAAAAGAGGAAACCAGAGTGAAATGGTGCTCAGCTTCAGTTTCGGCCACAGAATGGGAAAGTAGGAAAGgctttcttaaaacaaataaagccagAGTTTTACTGGAACCAGGAATATGGGATACTAAGAAGGACTagcattaaatatgcattttcataaaaaGCTTTTGAAGTGAACCTGAAGGCCATCATTAACTTTCAGACCTAATACTCTTTTtccaaatattcaaatatccAAGACAGTCGGTATCTGCCAGGGGAAGAGCTCAAGTCTTTACCTGTTACTAACTGCCCACATTTCCAGAAAATCACTTGAAACTACTTGAAATATACAGCCGGACTTGAAGGAACACAATGCATGTGGGACTGTTTAGGAGGGTTGCTGGCCTCATTCGGGAGATCAAACGATAATCGTGCATTCAAAGGTTTACATTATGCTCAAAGAAGGGTCCCACTTTTCTGGCattgggtttctttttttgttttcacaatttcacaactTATCCATTCATGTGGTACATCAGTTACAGGACTAACCACCAGATCCAGAATTCAAATTctctacagaaaataataatcacatgcCTTCTTATTAATGAATTTGTTCCTGAAAGCATCTAGCCACAAATACAATAACGCCCCCTACATACACACCCATATATCTTTAACATTCAAGGTATTCAAGGCAAATCAAAGGTAGTGATGCCCAATCCCAGTTTAGAAGATGTAACTCGTGTAGCTGTGTTTGAAGACTAAACCAAAGCAGTGACGCCATTGAAGAAGTTCATCTTGGAGTCACCAATTTCCCACTGTAAAAAGCAGATGCTGGAAGAGGAAGAGCTGGGTGAGATTGCCTCAGTGACTTATCTGGAAATGTGTCACTGCGGTGCTGCAATATAGGCATGCCTCTGGATTTTGTTCTGAACTCTTAGAATGACGAGTGACTAAGCACACTATCACTGGAGTCCTAAGACAGGGACCAAGGTCTTACACTTACTCACCACACGTGCAGCTAGAAAAGCCCTAGCAGTGCTGGCCTGAAAACCTTCAGcatggaataaaaaataaaaaaaaaagactcccaGGACAGGCATAATGGTGTTtgtgtatacatgtttttttaaaagtatCACTTTACAGGTGggtccatttcatttttaatctcaCACACAGCCGTATTCATACCACACAGTCTGAGGGTCATTGCTGGGGTCTGGGGAGGCCGGGGTGCTCTTGGGAGCGCTGGAGTTGCTGCGGTTCAGGGTATCTTCAGCGTTGAGTCCGACCCCATCTCCTTCAGGCTGGGCTTGGGGCTTTGACAGGGACGTGTCTGCCGGTCTCGGCTCCCGggcctcttcctcctctttggGGATGGCCCTGACTGGTGTCACCATAGCCACCTCGCCACGGTGCTGGGTGGCGCTCCGGCCCTGTGGTGGCTGGGGCTGGGCTGACTTGGGTGGGCCGTACTGGGCAGAAGAGTAGTGCTGGGAGCCACCAGTGCCGTATCGCTCATGCAATGGGGTGTTGGTGACGAGGGAGAGGGCCGAGGAGTGGTGATGGGGTGGCTGCAGCTGGGGCTTCAGTGGCGAGAGGGGGCGGTCCTCTTTGGGAGGGGCGAGAGACAAACGCCGGGGGTCTAGAGGGCGGTAGGCAAGCTCTCCCTGGGAGGTGGACGCAGCCAGCCGGGCGGATTGCGGCCTCTCACGGGCCACTCCTCCTGGCCACCGCAGAACCACCCCGGGGCTCTGATCGGCGGCCAGCTTGGGGGAGCTCTCCTGGCAAAAGCTGTCGGGCCCATTGGAGCGGAGGAGGTCCGCAGACGCCAAGCTGAATGTGCGGCTTAGGCTGCTGCTGTTGCCTCTGAGGCCTGGCTGCTGGGAGGGCTGTTGGCTCAGCTTCTCAGAGGGCCGGGATGCGCTCACCAAACGGTTTGGTAACGTTTGAGTCTGCCAGGGGGAAAGCACAGAGTGGAGGCCAGGAGTCTCCGGAGGTCGGATGTTGGGTTTCACGCTATGCCCCGGTTTGGGGCCCCTGCTGTCCGTTAGGTCACTGGGAGCAGCTTTAACAGTTGGCATGACGTAGCTTGTGGGCATCTTGGCACCCTCTTTCAGAGCGGGCGGCTTGCCGACAGCAGGGGGGGGCTCGTTGACCTTCTTGAAGTAATCCGTCAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU186011 True 3223 lncRNA 0.46 2 3135920 3139189

Neighbor

gene id symbol gene type direction distance location
AMCG00000075 NA coding upstream 28045 3076185 ~ 3107875 (+)
AMCG00000085 nkx2.1,nkx2-1,LOC107679765,LOC107666245,LOC107582966,LOC107578306 coding upstream 275736 2858153 ~ 2860184 (+)
AMCG00000088 NA coding upstream 294885 2839915 ~ 2841035 (+)
AMCG00000086 slc25a21,LOC107679800 coding upstream 345433 2776667 ~ 2790487 (+)
AMCG00000074 LOC106602716,LOC107752725 coding upstream 527929 2572779 ~ 2607991 (+)
AMCG00000078 NA coding downstream 264170 3403359 ~ 3416557 (+)
AMCG00000079 NA coding downstream 304324 3443513 ~ 3464306 (+)
AMCG00000081 NA coding downstream 325174 3464363 ~ 3469964 (+)
AMCG00000082 adssl1,pura1 coding downstream 384411 3523600 ~ 3536734 (+)
AMCG00000083 NA coding downstream 399499 3538688 ~ 3541156 (+)
G147814 NA non-coding upstream 99574 3035019 ~ 3036346 (+)
G147809 NA non-coding upstream 110131 3025378 ~ 3025789 (+)
G147808 NA non-coding upstream 112652 3022938 ~ 3023268 (+)
G147807 NA non-coding upstream 114349 3020395 ~ 3021571 (+)
G147806 NA non-coding upstream 119775 3010083 ~ 3016145 (+)
G147856 NA non-coding downstream 77595 3216784 ~ 3295868 (+)
G147994 NA non-coding downstream 491393 3630582 ~ 3631455 (+)
G148010 NA non-coding downstream 548774 3687963 ~ 3688231 (+)
G148036 NA non-coding downstream 589136 3728325 ~ 3759003 (+)
G148075 NA non-coding downstream 737182 3876371 ~ 3879521 (+)
G147726 LOC104962440 other upstream 731948 2403730 ~ 2403972 (+)
AMCG00000073 mta1,LOC107679789,LOC107666257,LOC107600838 other upstream 1077150 2036023 ~ 2058770 (+)
G147416 NA other upstream 2018970 1063085 ~ 1116950 (+)
G147311 NA other upstream 2637409 449652 ~ 498511 (+)
AMCG00000032 NA other upstream 2881479 231336 ~ 254441 (+)
AMCG00000094 NA other downstream 551583 3690772 ~ 3699093 (+)
AMCG00000093 srp14,LOC106610862 other downstream 581796 3720985 ~ 3724316 (+)
G148040 NA other downstream 620990 3760179 ~ 3760624 (+)
AMCG00000113 NA other downstream 972931 4112120 ~ 4193033 (+)
AMCG00000136 btbd7 other downstream 1949250 5088439 ~ 5161195 (+)

Expression


Co-expression Network