G148010


Basic Information

Item Value
gene id G148010
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 3687963 ~ 3688231 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU186231
TTTTTTGTTCCACATTTGAGCTTGGGCAATAATTCAGAACCTTTCTGAAATGTTCACGTCTGTCCTAGAAATACTTTTGTCttgatgtttgtatttatttatgtactttgaCACAACTGCTCGTATTTAGTGCAATCCTAATGCAGGAGAGCTAATGTTAGCTAATACTCTGCTATTTAGTTACTTCACATAAGTTGCCATTGTATTGATTGTCTGTATGTTTGATTAGCTacatgtttagagagggacctgttttCACTGTAGTTAGG

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0044391 ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0005829 cytosol cellular_component
GO:0005840 ribosome cellular_component
GO:0015935 small ribosomal subunit cellular_component

KEGG:

id description
ko03010 Ribosome
ko04672 Intestinal immune network for IgA production

RNA

RNA id representative length rna type GC content exon number start site end site
TU186231 True 269 lncRNA 0.35 1 3687963 3688231

Neighbor

gene id symbol gene type direction distance location
AMCG00000090 NA coding upstream 7246 3647806 ~ 3680717 (+)
AMCG00000083 NA coding upstream 146807 3538688 ~ 3541156 (+)
AMCG00000082 adssl1,pura1 coding upstream 151229 3523600 ~ 3536734 (+)
AMCG00000081 NA coding upstream 217999 3464363 ~ 3469964 (+)
AMCG00000079 NA coding upstream 223657 3443513 ~ 3464306 (+)
AMCG00000089 NA coding downstream 26433 3714664 ~ 3720675 (+)
AMCG00000102 pp14b,ppp1r14d,LOC105916596,LOC101077163,LOC105908342 coding downstream 218191 3906422 ~ 3915953 (+)
AMCG00000104 NA coding downstream 240241 3928472 ~ 3940793 (+)
AMCG00000103 NA coding downstream 269410 3957641 ~ 3976423 (+)
AMCG00000109 myh6,LOC102786665,LOC103031694,LOC108251423,LOC107589804 coding downstream 309947 3998178 ~ 4009288 (+)
G147994 NA non-coding upstream 56508 3630582 ~ 3631455 (+)
G147856 NA non-coding upstream 392095 3216784 ~ 3295868 (+)
G147842 NA non-coding upstream 548774 3135920 ~ 3139189 (+)
G147814 NA non-coding upstream 651617 3035019 ~ 3036346 (+)
G147809 NA non-coding upstream 662174 3025378 ~ 3025789 (+)
G148036 NA non-coding downstream 40094 3728325 ~ 3759003 (+)
G148075 NA non-coding downstream 188140 3876371 ~ 3879521 (+)
G148119 NA non-coding downstream 323423 4011654 ~ 4013403 (+)
G148143 NA non-coding downstream 472624 4160855 ~ 4162311 (+)
G148146 mthfd1,LOC106952296,LOC105908326,LOC103136077 non-coding downstream 485206 4173437 ~ 4175716 (+)
G147726 LOC104962440 other upstream 1283991 2403730 ~ 2403972 (+)
AMCG00000073 mta1,LOC107679789,LOC107666257,LOC107600838 other upstream 1629193 2036023 ~ 2058770 (+)
G147416 NA other upstream 2571013 1063085 ~ 1116950 (+)
G147311 NA other upstream 3189452 449652 ~ 498511 (+)
AMCG00000032 NA other upstream 3433522 231336 ~ 254441 (+)
AMCG00000094 NA other downstream 2541 3690772 ~ 3699093 (+)
AMCG00000093 srp14,LOC106610862 other downstream 32754 3720985 ~ 3724316 (+)
G148040 NA other downstream 71948 3760179 ~ 3760624 (+)
AMCG00000113 NA other downstream 423889 4112120 ~ 4193033 (+)
AMCG00000136 btbd7 other downstream 1400208 5088439 ~ 5161195 (+)

Expression


Co-expression Network