G148011


Basic Information

Item Value
gene id G148011
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 3687963 ~ 3688231 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU186232
CCTAACTACAGTGaaaacaggtccctctctaaacatgtAGCTAATCAAACATACAGACAATCAATACAATGGCAACTTATGTGAAGTAACTAAATAGCAGAGTATTAGCTAACATTAGCTCTCCTGCATTAGGATTGCACTAAATACGAGCAGTTGTGtcaaagtacataaataaatacaaacatcaaGACAAAAGTATTTCTAGGACAGACGTGAACATTTCAGAAAGGTTCTGAATTATTGCCCAAGCTCAAATGTGGAACAAAAAA

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0044391 ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0005829 cytosol cellular_component
GO:0005840 ribosome cellular_component
GO:0015935 small ribosomal subunit cellular_component

KEGG:

id description
ko03010 Ribosome
ko04672 Intestinal immune network for IgA production

RNA

RNA id representative length rna type GC content exon number start site end site
TU186232 True 269 lncRNA 0.35 1 3687963 3688231

Neighbor

gene id symbol gene type direction distance location
AMCG00000080 NA coding downstream 288310 3388190 ~ 3399653 (-)
AMCG00000076 NA coding downstream 360323 3308930 ~ 3327640 (-)
AMCG00000077 LOC104963337 coding downstream 382703 3291179 ~ 3305260 (-)
AMCG00000097 NA coding downstream 400156 3268369 ~ 3287807 (-)
AMCG00000101 NA coding downstream 432374 3238847 ~ 3255589 (-)
AMCG00000091 NA coding upstream 20152 3708383 ~ 3708970 (-)
AMCG00000092 NA coding upstream 38106 3726337 ~ 3735602 (-)
AMCG00000105 NA coding upstream 92752 3780983 ~ 3804361 (-)
AMCG00000107 NA coding upstream 188133 3876364 ~ 3897220 (-)
AMCG00000106 NA coding upstream 232364 3920595 ~ 3928012 (-)
G147997 NA non-coding downstream 45294 3642365 ~ 3642669 (-)
G147941 NA non-coding downstream 224331 3463303 ~ 3463632 (-)
G147921 NA non-coding downstream 379162 3307169 ~ 3308801 (-)
G147823 NA non-coding downstream 673380 3010249 ~ 3014583 (-)
G147782 slc25a21 non-coding downstream 894634 2790287 ~ 2793329 (-)
G148041 NA non-coding upstream 72071 3760302 ~ 3760617 (-)
G148181 NA non-coding upstream 542411 4230642 ~ 4231328 (-)
G148198 NA non-coding upstream 859593 4547824 ~ 4548060 (-)
G148364 NA non-coding upstream 1548637 5236868 ~ 5240683 (-)
G148400 cdca4 non-coding upstream 1689518 5377749 ~ 5380128 (-)
AMCG00000084 zbtb42,LOC106582697,LOC106610857,LOC103136097,LOC102793331 other downstream 129062 3552159 ~ 3558901 (-)
AMCG00000050 NA other downstream 2747128 890112 ~ 940835 (-)
G147324 NA other downstream 3202380 484720 ~ 485583 (-)
AMCG00000037 erh,LOC100699790,LOC101174968 other downstream 3295481 387118 ~ 392482 (-)
AMCG00000161 NA other upstream 1383236 5071467 ~ 5077246 (-)
G148395 NA other upstream 1650578 5338809 ~ 5342491 (-)
AMCG00000180 NA other upstream 2315955 6004186 ~ 6012637 (-)
AMCG00000177 NA other upstream 2357434 6045665 ~ 6067184 (-)
AMCG00000168 gchfr,LOC106583112 other upstream 2462489 6150720 ~ 6154301 (-)

Expression


Co-expression Network