G148400 (cdca4)


Basic Information

Item Value
gene id G148400
gene name cdca4
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 5377749 ~ 5380128 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU186757
CCCATTCATTTCTAAAGTACCCATCAAATAACTGAAGACACGACGTATGCAATATTTTGTaccttttattaaaaattatttacaaaaatgctacaatgtattttattcaaatataaaaaaatgcatacagtCTACCATAGGTTTAGGTATTAAATGTCAATGTGTACTCGATTAAACTGAACTGCACTGCCTTCAAATAGGGAAGGAGGTGTGAGGACTACTTCTATAATACTGGCTGTGTTCATACATAATGTTGCCTGAGTAATCTCTTAGCCATGATACAGAACAATCTTCCGTACAATCTCTTTAAAAGAagaccattttattttgtaagacaACTGCTCAGTAAACCAtacttttaaaactgaatacCTTTATATGAACCAGTTAGATGAACCATGCCCCTCagattttaaatactgtttgaATGTTACTGATCTGTGGTAACTAAAAATGCATAGTATATGGAAAGTGCCACCACTTGAGATTACAGGAAATGGTATGAAGTTcatagtttaaaacaaacaaacaaaaaaggaagtaTTTTGAAAGCCAACTCCACTTTGAATTCCACCAAACTCAAAATTCATTCTGACATGcttgcatttaataaataaaaaaataaattagaactCAAATAACTTAAAACTGGGTCTGACCCATAATTCTTCATttgtaacaatacaaatatcagAACATATGGCTTCGAACAGCAAAAGCAGGAGCAAGTTGTATGTATTTCCGCCATTTCCGCAATCATTCAGGAGCGTGTCCTGCTTGGTATGTCTTATCAGATACAGGTTGTGCATTTTGCCTAagcacaaatataaaataaggtgCCTTTCACCATTTCTACACTGTTtggaattttaaaatacatttctctcctCTTCGAGCACATATTGCATTCAGGTATCAAagtcaaaggaagacatctttCCACATAGATTTACCAATTTTCTTCTGATAGTTCTctcaggttaaaaaaaaaaataatctaaaagtACTGTAACATTTTCCAAGCAGTATgtgttgtaaaaatatatatttatatatttatatatttttttaaatcttttttttttctttttttttttttttttaggaaaatatGTGTAGCTTTAGAAGTTCCGATACATAACTTGTTTTGTTCACAATTATGTAGTGTAATGACATCATTTTAGAGTAAAtgtcacaataaattaaaaaaaagaaaaaaaaagaaatgaaaaaacataaccCACAtatagaaaacatacaaaagtatgtaaataaaattacaatggCAGGCACGTCAAATCACAGCCCAGAAAAAACATTATCATGTTAATTAAGAGCTCATGATTTCACTTACCTAccatatacgtgtgtgtgtgttcatagcCACACATAGACACTGACATACGTAcagtttatacaaaaaaaaacaagtcttgtCTAGGAGCCTACAATGATCTCCATAATGTGATCTAGTTCGTTGAGATCTGGTCGGCAGCTCGAGTTGGAGCCGATTGAAGACGGACTGTGAGATGACAAACTCTCCAGTAAGTCATAGGGCCCCATTTTGGGGGCGCTCTGCATTCCAGTCAACATGGTGTCCAGGTCATAATAGGAGGCGTCAACGTCTGAAAAGAGCTCCTCAAGGGCGGGGTCAGGACTGGGGGCAGGGTTCTTGATTTCAAAAGTGCCGAAGACTTGCTCCGTGGGCTTGgagtcctcctcctcctcctcgtcctcatcttcttcctcctcctcctcctcctcctcttcttcttcttcttcctcttcttcctcctcctcctcgtcgtcctcctcctcatcctcctcctcctcgtcctcacAGCTCTCCTTGGTATCATCCTTCTCCCAGGCACCAATGGGGCTGGGTAGGTACGCCGAGGCGGCCTCCGAGGACACCGCACACAAGGTGTCGTCCACCACCTCTTCCGAGTGGCAACCGATGGAGTGGCAGGCCTCGTAGCTGATGACGTTGAAGGACTTCTCCTCGTCCGGCTCCTTGGGCGACGGCCGGCAGAGGATCTCCGTGGCCACCAGGCGGTCGGCCGAGTTCTGGTTGGCGTTCAGGGCCTCCGTCATGATCTGCCAGCTGCCGTCCTGCGTCATCTCCTCCTGGATCTGCCGGACCGTGTTGGCGATGAGGACGGACCGGCACAAGTTAGGCTCCACCAGCATGTGACACAGCTGCAGCTTTATCAAGGACATGTCCAGCAGGGACTGGCGCTGGAGGTTGTACGAAGACATCACTTTAATATTTGCGGGACTCTCTTCCACCATCTCGTCCCCGTCAGAGAATTTACGTTTTGTGCCCTTTGGAAACATTTTGTcc

Function

symbol description
cdca4 Predicted to be involved in chromatin-mediated maintenance of transcription. Predicted to be active in nucleus. Orthologous to human CDCA4 (cell division cycle associated 4).

NR:

description
cell division cycle-associated protein 4 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU186757 True 2347 lncRNA 0.41 2 5377749 5380128

Neighbor

gene id symbol gene type direction distance location
AMCG00000151 NA coding downstream 58220 5312483 ~ 5319529 (-)
AMCG00000149 LOC107721334,LOC107659197,LOC107585782,LOC104966051 coding downstream 71669 5293188 ~ 5306080 (-)
AMCG00000150 NA coding downstream 92317 5274675 ~ 5285432 (-)
AMCG00000140 NA coding downstream 121361 5243028 ~ 5256388 (-)
AMCG00000138 NA coding downstream 202630 5159727 ~ 5175119 (-)
AMCG00000144 NA coding upstream 18259 5398387 ~ 5407241 (-)
AMCG00000158 pcnx1 coding upstream 92033 5472161 ~ 5516402 (-)
AMCG00000156 med6,LOC102793293 coding upstream 141327 5521455 ~ 5528826 (-)
AMCG00000157 NA coding upstream 164701 5544829 ~ 5573070 (-)
AMCG00000154 NA coding upstream 205819 5585947 ~ 5620822 (-)
G148364 NA non-coding downstream 137066 5236868 ~ 5240683 (-)
G148198 NA non-coding downstream 829689 4547824 ~ 4548060 (-)
G148181 NA non-coding downstream 1146421 4230642 ~ 4231328 (-)
G148041 NA non-coding downstream 1617132 3760302 ~ 3760617 (-)
G148011 NA non-coding downstream 1689518 3687963 ~ 3688231 (-)
G148416 NA non-coding upstream 70872 5451000 ~ 5454248 (-)
G148417 NA non-coding upstream 75118 5455246 ~ 5455489 (-)
G148486 NA non-coding upstream 330891 5711019 ~ 5711876 (-)
G148610 NA non-coding upstream 767801 6147929 ~ 6148286 (-)
G148801 NA non-coding upstream 1760234 7140362 ~ 7140968 (-)
G148395 NA other downstream 35258 5338809 ~ 5342491 (-)
AMCG00000161 NA other downstream 300503 5071467 ~ 5077246 (-)
AMCG00000084 zbtb42,LOC106582697,LOC106610857,LOC103136097,LOC102793331 other downstream 1818848 3552159 ~ 3558901 (-)
AMCG00000050 NA other downstream 4436914 890112 ~ 940835 (-)
G147324 NA other downstream 4892166 484720 ~ 485583 (-)
AMCG00000180 NA other upstream 624058 6004186 ~ 6012637 (-)
AMCG00000177 NA other upstream 665537 6045665 ~ 6067184 (-)
AMCG00000168 gchfr,LOC106583112 other upstream 770592 6150720 ~ 6154301 (-)
AMCG00000189 NA other upstream 827386 6207514 ~ 6209957 (-)
AMCG00000190 cyp1c1,cyp1c3,cyp1c2,LOC107745367,LOC106610849 other upstream 833877 6214005 ~ 6216441 (-)

Expression


Co-expression Network