G148459


Basic Information

Item Value
gene id G148459
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 5677983 ~ 5678620 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU186824
ccccgatccTGGCCCTTTTTGGTTGGAAATGCTTTGCTTTCGCAGCTGTCAGGGGCAAGGAAGGCGATCTGATGTTGCTTCAGTTAATGCTTGAGGCTTCAAATCCATGCATAGGGCTCCCAAGACcagcagtgctttttttttttcttttatccccccccccctgtgCCCTTCTACGTTAGCGTAAAAAATATTTGGTTGTCTGGCGATTAAACCGCTTccgtaaaaataaacaaatcgaTTTCAGCATACAAAAATAGACGTAGAAATATAAATCTAATCTAAATGCATTCTTCTGAATTACAGTCCCTTCCTTATGATTCTGATAtggtatttcattattataattattttgcaagAACCCAATGGGCTGATAACGGCGCGCTGCAAAGAGTCAaggttctttttttcttcttcttcttttcttccctctctttctctccccccccttcAATTCTAGTTGGCCggtttatttacagtgtttatTCCTATCCGCTCCTTCTGAAGGGATGCCCATTCTCCGAAGCATCGCAGGAGTGAATTCAAATGGCAAGTCTCACAGCCTCGATGCCCCCCCAGAaccaaaatctctctctctctctctctctctctctctctctctctctcacacacacaca

Function

GO: NA

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes

RNA

RNA id representative length rna type GC content exon number start site end site
TU186824 True 638 lncRNA 0.44 1 5677983 5678620

Neighbor

gene id symbol gene type direction distance location
AMCG00000155 ttc9 coding upstream 142387 5532610 ~ 5535596 (+)
AMCG00000143 NA coding upstream 207470 5463949 ~ 5470513 (+)
AMCG00000141 NA coding upstream 282210 5390325 ~ 5395773 (+)
AMCG00000147 cdca4,LOC106599634,LOC106610950 coding upstream 297824 5375615 ~ 5380159 (+)
AMCG00000152 NA coding upstream 304646 5340902 ~ 5373337 (+)
AMCG00000170 NA coding downstream 156866 5835486 ~ 5844974 (+)
AMCG00000164 desi2,LOC103144802,LOC108232058,LOC105890990,LOC103381363,LOC103458308 coding downstream 191618 5870238 ~ 5874652 (+)
AMCG00000165 NA coding downstream 260845 5939465 ~ 5967106 (+)
AMCG00000173 NA coding downstream 305939 5984559 ~ 5993668 (+)
AMCG00000174 NA coding downstream 352669 6031289 ~ 6034264 (+)
G148452 NA non-coding upstream 133505 5540679 ~ 5544478 (+)
G148402 NA non-coding upstream 289169 5382568 ~ 5388814 (+)
G148396 NA non-coding upstream 323798 5353951 ~ 5354185 (+)
G148200 NA non-coding upstream 1095432 4582311 ~ 4582551 (+)
G148146 mthfd1,LOC106952296,LOC105908326,LOC103136077 non-coding upstream 1502267 4173437 ~ 4175716 (+)
G148468 actn1,LOC100696265,LOC101469024,LOC106600942 non-coding downstream 36973 5715593 ~ 5719481 (+)
G148519 NA non-coding downstream 173025 5851645 ~ 6045324 (+)
G148545 chp1 non-coding downstream 339423 6018043 ~ 6029777 (+)
G148609 NA non-coding downstream 469302 6147922 ~ 6148285 (+)
G148618 LOC107745367 non-coding downstream 528733 6207353 ~ 6214760 (+)
AMCG00000142 NA other upstream 223777 5435158 ~ 5454206 (+)
AMCG00000146 NA other upstream 337433 5334513 ~ 5340550 (+)
AMCG00000145 NA other upstream 363030 5307190 ~ 5314953 (+)
AMCG00000136 btbd7 other upstream 516788 5088439 ~ 5161195 (+)
AMCG00000113 NA other upstream 1484950 4112120 ~ 4193033 (+)
AMCG00000166 srsf5,LOC106602985,LOC106611464 other downstream 202403 5881023 ~ 5888027 (+)
AMCG00000175 NA other downstream 322291 6000911 ~ 6011397 (+)
AMCG00000201 NA other downstream 790725 6469345 ~ 6474232 (+)
AMCG00000198 LOC106586563 other downstream 822273 6500893 ~ 6520863 (+)
AMCG00000216 srsf5b,srsf5,LOC107093669,LOC100707620,LOC102304179,LOC102202212,LOC103457348,LOC105936365,LOC105024333,LOC107756601,LOC107602033,LOC103029514,LOC103359433,LOC108233477 other downstream 1612046 7290666 ~ 7296965 (+)

Expression


Co-expression Network