G148468 (actn1,LOC100696265,LOC101469024,LOC106600942)


Basic Information

Item Value
gene id G148468
gene name actn1,LOC100696265,LOC101469024,LOC106600942
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 5715593 ~ 5719481 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU186834
CCAAGATGGGGGCAAATTTCAGATCTGCACTGCACCTGCCAattccctccccctcctgcctGACAGAAGACACTTCCTCCTGGGGCAGCAGGCTCCTTCACATACCTTGTCTCCAGCCAGCACCTTGAAGGAGGCCATGACCTGGTCCGCGGTATCCGTGTCGGCCGTCTCCCGGGACATGAAGTCTATGAAAGCCTGGAAGGTGACCAGCCCAAGTCGGTTGGGGTCCACGATGCTCATGATACGGGAAAACTCAGCCTCCCCCTGCTGTGCGTCGTTGGCGATATCAAAGCCCAGGCTGATCAGGCAGGCCTTGAACTCCTCCGCGCCCAGCGTCCCGGAGTGGTCCTGGGCGGCCGGAGCATCGGCAGCGGGTGGTGGGGTGTCGAGTCACACGGCATGCAGACCAGGGGGATGGTGAGgtttggggtggggtgggggttgggggtgcgTCATGCAGATTGAAGGAAAGAAGGGCGATGGGGGGGGGGCATGCACGAGAGACagagacaacaaaacaaagtgcacaaCAGTTAGACCTTGCAGTGGACATTCCTAGCAGGTTTAAAAAGGAGGGCTCGCCTCCATCACACGAAAATGCATTAATGCAGTGGCGGGCAGACGAGACCGTTGTGTGTGAGGTTGTTAACGTCTCCAACATCACTGAGTCCACAGCAAAGGGAAACCTCCGGCTCTGACCAGTGTAGTAGAAACGGACACCGTCGGGCTAGCTTGCTTTCTGAGACAAGAACACTTAACAAACAGGCCCTGAAACTGAAGTTAATTATGCTCCTGTTATACTTGCATTTAGgctgatacatttaaattcactaATGGCTTAAAGTATATTTAGAAAGCATGCCAGGGAAAGGTGCCTTCTAGTTGGAAAATCAAGCAATACTGACTGTACTTAACACTAAATTGACTGTACTTAATACCAAGTGCACTGGATAGAATCCTGAGGTTTCCCTTGAACAGTGAATGGTTGTATTAGTATCACTCTACAAACTCATGGCACCTGTACAAACTCATGGCATCTGTACACTTCGCAGTGGGCTTCAAACATCTATGAGTATTGTAATTCGTTAaccaaattaatgtataaaaatgaacCTTTTCCTGGAATTTTTATTCTGCCCCAGCAAAATCCACTGAATGAAGCGACACTCTTTATTGAAGCTTAATATGATTAAATCCCACTGTCCTTGTGTACAGATGCATTATGATAAACCTGGTACTTAAGACTCATTCAATTAGAAACATATGCTGGACTCAAAACATACAGTCAAATAGACGCCTCCAGTAAGATAGGTCTACAGATCACTCATTATAGTTCTAAACAACTGCACAACCAAAAACCTATGCGATGTCCATATCCACTCACCAATATTTGGTCAGTCTTCTCTTCATACTGACGTTGTCTAAATATGCAGAAAGTACCATCACATCTAAGAACTGTAAAACccttattaaaatgtgaatctAAAAGGCTTCTTTGTAACACCACTAGCTGGTAGGTTGGCTCCCTTGGATGCACATTTTATTCCGGGTGGAACTGTGACTTAAAATGACTCGATTTGCACGTCGTATTTGTAAGACAGAGATTCTCATTTGGTTTCCTGCTTTTTGACAGCTAGAGGCAGAAACCCCCGACGGTAACAAAAGACAGCTGAGAATCAGTCGTTAAGTAATTGtgacccccccaaaaaaagataCTGTATTTATACCACATGGATAACTAGGTTTCAATTCCATGCCTTTTGTACTAGGCTTATGCTAGAATAATGGAAGAAACAATGGACACTTTTGTTGCTGATCAAagaccaaaacaagaaaactataTAAAGATGACCACAGCAAATGTCTTCCATACTTGGGCTGCATAGTTAGAAGATTAACAAGTACCACCACTGTACTTGAATGAATCAACTATTCAGAGTTGGTAGATGTGCATTAAGGAGTTGAACTATTTTCTAAGTGGATGGTTTTCAACTCTTTAAAGGAAGGCAGAGGTAGGATGTGtgcacacgtacacacactTGCTCCTCTGTAGAGAGACCTCGGCCCCCCCAACCCTTCTTCTCCCTTCCCACCCCCTCGACTGACCCTGTCGAAATGGTTGAAGGAGGCCCTGAACTCGTTCATCTGGTCCTGGCTGATGCCTTTGGCGTCGCGCGTCAGGATCTGGTTCTCAATCTCATTGATGGTGCGAGCGATGGTGGTGAGGAGCTGCTCCCAGCCAACACGGATGTG

Function

symbol description
actn1 Predicted to enable actin binding activity and calcium ion binding activity. Is expressed in several structures, including head muscle; intestine; nervous system; ovary; and ventral intermandibularis anterior. Human ortholog(s) of this gene implicated in platelet-type bleeding disorder 15. Orthologous to human ACTN1 (actinin alpha 1).

NR:

description
PREDICTED: alpha-actinin-1 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU186834 True 2253 lncRNA 0.47 2 5715593 5719481

Neighbor

gene id symbol gene type direction distance location
AMCG00000155 ttc9 coding upstream 179997 5532610 ~ 5535596 (+)
AMCG00000143 NA coding upstream 245080 5463949 ~ 5470513 (+)
AMCG00000141 NA coding upstream 319820 5390325 ~ 5395773 (+)
AMCG00000147 cdca4,LOC106599634,LOC106610950 coding upstream 335434 5375615 ~ 5380159 (+)
AMCG00000152 NA coding upstream 342256 5340902 ~ 5373337 (+)
AMCG00000170 NA coding downstream 116005 5835486 ~ 5844974 (+)
AMCG00000164 desi2,LOC103144802,LOC108232058,LOC105890990,LOC103381363,LOC103458308 coding downstream 150757 5870238 ~ 5874652 (+)
AMCG00000165 NA coding downstream 219984 5939465 ~ 5967106 (+)
AMCG00000173 NA coding downstream 265078 5984559 ~ 5993668 (+)
AMCG00000174 NA coding downstream 311808 6031289 ~ 6034264 (+)
G148459 NA non-coding upstream 36973 5677983 ~ 5678620 (+)
G148452 NA non-coding upstream 171115 5540679 ~ 5544478 (+)
G148402 NA non-coding upstream 326779 5382568 ~ 5388814 (+)
G148396 NA non-coding upstream 361408 5353951 ~ 5354185 (+)
G148200 NA non-coding upstream 1133042 4582311 ~ 4582551 (+)
G148519 NA non-coding downstream 132164 5851645 ~ 6045324 (+)
G148545 chp1 non-coding downstream 298562 6018043 ~ 6029777 (+)
G148609 NA non-coding downstream 428441 6147922 ~ 6148285 (+)
G148618 LOC107745367 non-coding downstream 487872 6207353 ~ 6214760 (+)
G148631 cyp1c1,cyp1c2,cyp1c3,LOC106610849 non-coding downstream 496275 6215756 ~ 6216459 (+)
AMCG00000142 NA other upstream 261387 5435158 ~ 5454206 (+)
AMCG00000146 NA other upstream 375043 5334513 ~ 5340550 (+)
AMCG00000145 NA other upstream 400640 5307190 ~ 5314953 (+)
AMCG00000136 btbd7 other upstream 554398 5088439 ~ 5161195 (+)
AMCG00000113 NA other upstream 1522560 4112120 ~ 4193033 (+)
AMCG00000166 srsf5,LOC106602985,LOC106611464 other downstream 161542 5881023 ~ 5888027 (+)
AMCG00000175 NA other downstream 281430 6000911 ~ 6011397 (+)
AMCG00000201 NA other downstream 749864 6469345 ~ 6474232 (+)
AMCG00000198 LOC106586563 other downstream 781412 6500893 ~ 6520863 (+)
AMCG00000216 srsf5b,srsf5,LOC107093669,LOC100707620,LOC102304179,LOC102202212,LOC103457348,LOC105936365,LOC105024333,LOC107756601,LOC107602033,LOC103029514,LOC103359433,LOC108233477 other downstream 1571185 7290666 ~ 7296965 (+)

Expression


Co-expression Network