G148545 (chp1)


Basic Information

Item Value
gene id G148545
gene name chp1
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 6018043 ~ 6029777 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU186930
aacattttaatgtGCAAGCATGGTACTtcacatctttattttaatggaaactatacatttggattttattttgtgaaacagatTGTGTGCGCAATTAAATTACCTCTGTACCATTTGATATTCCTCGAATTGTTTTGATTGACAACTCTTAAATAatgctttttcaattaaaaagaatatTCAACAGCAGCAATAGCagactacaaaaaaaatattccctATCCACAATTTAGACAATCACAATTTTCTGCTGTTCTGTGCACACACGTCAGGTTTTAATTGTTCCTTTCAGTATATTCacatactgaaacaaaaccaacaccAAATCATTAAGGCCCCTTTTAAAGTACCTGAAACTAATAAGCAAATACAATAAACCATATACATAACATTCTTAACAATGACAAGGCtccaattacatttacagttacaGCAAAACAAGTTTTGCACAGCAACCGATTAAATCACAATGCACTTCAGGTTCTTTTATCCTGTATAATGGGTATGTCTGCTGTGGGCAGTGccagaaataaacacaacctGTGTGTCTTACAGCTGTGCTGATCAGGAACTACCTTTAAATGGAAttcaattgaaaacaaaatctgatttGACTTGTGATTGGTCAGCCCATTAGGATTCTTGATGGGGCCACTTCAGACCGCTTCCAACACAGCACTAAAACAAGAAAGAACTTGCCAGACgagttaaaagaaaataaataaataaaatagtatcaATGAGCTGAGTGGCACACCGGATAGTGAGATACAGGTGGACTTTATGAAATGTGACTGGGATTTAACTGCAATCTCGGTGCTTTGCGATTAGTTTgcgtttgttttgattttaaacaaaatcaagcGATACGAAAATACACTACCAAGGTGCTTTTCTAAACTGCTTAactgatgaaaaaaaatgtaccaaAATAATATAGACACGGTTTGGTGCTAAGACAGGCTGTGGCACTAGAGCTCAAAGGCAAGACCCTGAACCAGAATTGAATCTGCCCAATTGAAAACAAGAACAGGTCCCACCTTGGCTGACAGAAAGCAAAAGGAATGCCTTCAGTAACACTTCAAAAGTGAGGCTCTCCATAATTATCTGCAGCTACAGCGATATGATTTTATCATAGGCACAAGGGATTCTATTTGACATTGTAGTAATTATAATTGATTGACATTCATAGTAAGACACACGGAATACAGAAAATTAGGAACCCACAAGGATATTAACCAACTGCTGATCTAGTCTATAGACAGCGCTGTCCCCTTCATTGTAATGGGGGCAATTGATCCGTCTCCGTAACTTAAACCATAATGGAATTATaggtagtattttattttattttttaaacaattacttCTGTTTGGCTTtagaatatataatttcaatgtgCGTCTGGCCGGGAATACACAGAGAGAGCTGAGCAGAGGGGAAATGCCATCAGCATCATAAATAAAGACACGgtcattcaaatatttgttttgttgcttttttaaactgtgtaattACAGAATTTGTTTACAAGGTGAAAAGCTGTAGATAAAACTGCTACTGCAATGCCATGACACTTTGATCTAAGGTGATAGCTAGGTTACCGTCATTGGCATTTTCAGGCATGCTCAAGTATATTTCTAATCCTTCCTAAAGAAAACACATAGAGATCATGGTATACACATACCAAGGCACACAAATTCCCTTTGTTTCACAGAACAGTCCAAGGCAGGTAgcccacaaaaaaacaaagatgatcCATTGATTAATTTCTTGGTCAGCACGCGTGCACAGTAAGATCTACTGTTCACAATCCAGAGCACAGTACAGAAGATGGCATTTGATCCTTCTTTAGGTGGTGATGGCAAAACTCAGGTCACATGGCTCTTAATGCAGGAAGCGGATACTCATTTTCTGCTCTACATCCACCTTTTCTAGTACCTTATGAACTCGGAGAACGAGATGCATCGGTCTCCGTTCTGATCCGCTTCTTGGATGGTCCGGTCCGCGATGCTGCCTAGCTGCTCGTCCGAGATGTTGACACCAACCATCATGCGCAGCACCTGGCAAACAACACTGTGGTTATTTATGCCACCGCGGCAGTACACTTGGTACTCCTTTAAGTAACACCGGAGATTATACCTACAGATTGATTTCTGGTGGGTAATTACAGAGAACGTATTCCAGTTGACACTACAGACCAGGTCGGCGCAGGTGACCTCAGAACAATTACCTTTCCTTGTCCTGTCCCGAGGCTACCTTTTTAAAGCCAGTGACAGCATCGCCTCATTCATGACAGCTGTCTCCCAGGGACACAATTACCACAGCTCCAGAGCAGTCACTACCTTCAAATGAATACCCCCACATTATTCCCTATGCTGAGCCTAGCAACACTGTAGCACCGCAAAGAGACCCATGGGCTACCCAGCCACTGCATAAGCAATTGCTAGCTGTTCACACACACGAAACACAGGGTTCCCCCCAGAAAATTGCATGGGCATGGCAATCTGTTTAAGACTTGTTggttggggtgtgtgtgtgtagctgtagtGAAAGAAGGTGTGGAGGTTTAGCTTCAACGATCGAGAGAGTCGAGAGGGTGTAGCCGTAGTGAAGGGtgcttgcattttaaaatggttttcttaatatatacatatatttaaaaacaacccaACTCAGAGGTGTGTCAGGGCAGAACATACTAATTTACCCCACAGCCTGTGCTGCGCTTTCAATTCTGCAGACGACGTAACCCGATTTGGAAGAACACGCCTGTACTGTGTTAATGTTTGTCAATATTATGACACTGGTGGAGGAACACAAATCTCTCACTTGAATTTAAAACCCAGCCTCACTGTGTAAGGTAGCACAGACAGATTGGGTATATTCTCAGGTCAGGGAGAGCATTAGCCAATTTAACCCCAGACAGCAGCTCTCAGTTTGGTGTTCTTTTTGATTGTACGAATTGACTAGAGAACCTTTTAAACTCCTATTTTTGCTTGAGACAGTGCTGGAGTTTTTGtagaatgaaatgcaaagagGTTGTATACAGCCACAGAGTCAAAACCCTGTTCTTCACTCAAGAAGTTTGCATTGATGCCAATACAATGGGACTCAACAGATCTACTAAATCAGAAGAGGCTCAGATAAATCCTACATGCCAGACAaaggaatacaataaatacactgaGAGGGCAACCTTGCCTAGCGTGCGTCAATTAGAAAAAATCCAGTTTCAGTGACAAAATCAGCATTCTTAGATTTAATCGGATATACAACGATAAAGGTTTTTTCCCTTCAACAAAGTATAATATTTCAATCCATGTTAGGTACTGTTATCAGGAAGAAACAATGAACACAATAGgctagcttaaaaaaaaataataatacaatcctGTTTTTTAATATGGGATCCCAAATACCAATTTAGAAGAATTATACATCTGTTAACAGTGCATATTTAAACTCCGCTGACGTCTTTGTATAGACGCTTCTCAACAGATCAAGTGATCATTCAATTCTGACTCATCTGTGCAGACTAATGCTCTTCAAGAATTCAACAATTATCCTTTCAAGCTGTGTGGCCAGTCATGTGGGTGTAAGCAGATTTCTGTACATCTCTGGGATCTCTTACAGAGAAATAAGCAATGCCAATGAGAGACTTCAAAATCACTCGCATGctccatttaattaaaacaaaacaaaaatgggttAATATGAAGGCCAGAATGCCATTCATGTGAAAATGGTTTTCTAAAGGTCTAAAAATACCTTTGACATCTGGTAAGCTCGTCAGTGGGCACGCAATACATTGTCAGGAGATAGAGCAGTCATGAATACAAGTACACATGCAATACAACAGGATTAagagttgttgttattattatactccttagcagacgcccttgtccatggcaacttacaattgttacaatacatttcatacagCTGGGGTTTTACCCATTCAtacaatctaggtaaagtaccttgctaaTAGCAGTGTCCTTCCACcaggattgaacccatgaccctccactCAGGAATCCAGAGGACttaccactactccacactgatGCCCAAGGGTCAAAGCTTGATGCATAGGATTGCATTTTTCAGAACATGTAACTGCCTTCTGCATTTCCAGAAACCCAACTCAATCCCAACTCAAAACCAATCTCATCCTGTTCCATTGAGATTCACTATTGATTCCAGAGCCTCTCCGAAAATACAAGCACCTTCATTTAGGACAAGAGGTCCAGTTCAGACAAGTAGGTTAAAGCGAGTGAAAGGACACAATCCAGTAATGTCTGGGATTCATACCTGTAAGAGCTCATCTCGGGAAATCTTGTCATCTCTGTCCAGGTCATAAAGCCGAAATGCAACTGTGGATACATTAATGTATCtaaaaatcattacattaaCTGCATAATACATGTAGCACTTTCATTACATGACCAGATCACGTGTCAGACTGTGTTTACATCACCCTGCTTTTATCCAACAGAGCACAATGGAAAAACAATTGAACCTTTTCAGAGGCTAAGGAAGAAAGGGTCATTGGTTTCTAATAATGTCCAAAATACATGTCAAGTGTCTGGACCATACACAACACTCAAATGGGAAACTCATAGTGCTGGGCTGTGCACAAACACTGTGTGAGGTACATACAAAGCAGTTTGTTGTTTCTGCTGTTGAGGGGCTCTGTGGCCTCAGGATCTTTGCTCTTCTCGTGGTCTTCAATGGGGCGGAAGTGAGCCAGGGTTCGCATGAAGCCCCGGAAATTGACTTGGTCCtctCCCTCAGGAAAGAAGGCGTTGATGATTCGGTCTCCCAGGGGGTTAATGGCAAGCTCTGGTATTCTTTGGAAATCTTCCCGGCTTAGTGTGCCGTTCTCCCCCTTGTCCAGACTGGTAAACCGACTGTACAGCCGTGTGATCTGACTGTGAGAAAAGCCGGTCTCCTTCTTTATTTCCTCAATCTCTTCCTCCCGCAGCAACGACGAAGCTCTGGATCCCATTTTCACTATTTAAATGTCTCGATATCTGCCTCGGAAGCCTTCAGCGCAATGACTACCAGCTCTGTGGTTCTTCTGCAGGAATGTCTCTAACGTGAAATACAAGTCTACAACAGCCACCGGTTTGGGCGCACAGTACTCCTACACTCCTCTACAAAACGAGCAGTGTCGTTTATCACCTATTATTATCATTGCTAGCACACCAAGAAAGCACCTCCCCGGTCTCTTGCTATTGGGTCCAGGTACAGGTTGAAGAAATCATGTGGGGAAGTGACGACGTGCCTTTATTCAATCATGCTGCCCAGGCACTGTTCGAGGAGCAATAACACCAGATCTTGTGTCACCGTGGTTCTGCGATTGCGACAAAATCATGTGAAAATACCCCGTTTCCGCGGTGCCTTGTGCAAAGCATTGTGG

Function

symbol description
chp1 Predicted to enable calcium ion binding activity. Is expressed in pronephric duct and pronephros. Human ortholog(s) of this gene implicated in spastic ataxia. Orthologous to human CHP1 (calcineurin like EF-hand protein 1).

NR:

description
PREDICTED: calcineurin B homologous protein 1 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU186930 True 5431 lncRNA 0.41 5 6018043 6029777

Neighbor

gene id symbol gene type direction distance location
AMCG00000173 NA coding upstream 24375 5984559 ~ 5993668 (+)
AMCG00000165 NA coding upstream 50937 5939465 ~ 5967106 (+)
AMCG00000164 desi2,LOC103144802,LOC108232058,LOC105890990,LOC103381363,LOC103458308 coding upstream 143391 5870238 ~ 5874652 (+)
AMCG00000170 NA coding upstream 173069 5835486 ~ 5844974 (+)
AMCG00000155 ttc9 coding upstream 482447 5532610 ~ 5535596 (+)
AMCG00000174 NA coding downstream 1512 6031289 ~ 6034264 (+)
AMCG00000186 dnajc17 coding downstream 68716 6098493 ~ 6109137 (+)
AMCG00000185 NA coding downstream 128017 6157794 ~ 6170088 (+)
AMCG00000183 NA coding downstream 249771 6279548 ~ 6283057 (+)
AMCG00000181 NA coding downstream 327351 6357128 ~ 6364974 (+)
G148468 actn1,LOC100696265,LOC101469024,LOC106600942 non-coding upstream 298562 5715593 ~ 5719481 (+)
G148459 NA non-coding upstream 339423 5677983 ~ 5678620 (+)
G148452 NA non-coding upstream 473565 5540679 ~ 5544478 (+)
G148402 NA non-coding upstream 629229 5382568 ~ 5388814 (+)
G148396 NA non-coding upstream 663858 5353951 ~ 5354185 (+)
G148609 NA non-coding downstream 118145 6147922 ~ 6148285 (+)
G148618 LOC107745367 non-coding downstream 177576 6207353 ~ 6214760 (+)
G148631 cyp1c1,cyp1c2,cyp1c3,LOC106610849 non-coding downstream 185979 6215756 ~ 6216459 (+)
G148656 NA non-coding downstream 276851 6306628 ~ 6306867 (+)
G148764 NA non-coding downstream 893517 6923294 ~ 6927254 (+)
AMCG00000175 NA other upstream 6646 6000911 ~ 6011397 (+)
AMCG00000166 srsf5,LOC106602985,LOC106611464 other upstream 130016 5881023 ~ 5888027 (+)
AMCG00000142 NA other upstream 563837 5435158 ~ 5454206 (+)
AMCG00000146 NA other upstream 677493 5334513 ~ 5340550 (+)
AMCG00000145 NA other upstream 703090 5307190 ~ 5314953 (+)
AMCG00000201 NA other downstream 439568 6469345 ~ 6474232 (+)
AMCG00000198 LOC106586563 other downstream 471116 6500893 ~ 6520863 (+)
AMCG00000216 srsf5b,srsf5,LOC107093669,LOC100707620,LOC102304179,LOC102202212,LOC103457348,LOC105936365,LOC105024333,LOC107756601,LOC107602033,LOC103029514,LOC103359433,LOC108233477 other downstream 1260889 7290666 ~ 7296965 (+)
AMCG00000215 max,LOC107668248,LOC103457350 other downstream 1284095 7313872 ~ 7324451 (+)
AMCG00000217 gpx2 other downstream 1329501 7359278 ~ 7362707 (+)

Expression


Co-expression Network