G148618 (LOC107745367)


Basic Information

Item Value
gene id G148618
gene name LOC107745367
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 6207353 ~ 6214760 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU187010
TGTTGGCTGTggttagaaaaacaacaattctGTAATTAAAGCAGCCATTCCTTTACAttgccaaattaattaattcattttttaaccaATACTCACTTGAGTGTTATCAGCATCCTGCAGTCTGTTTGAAATATAGATGCCTGAGGACAATATTAGCAATATCATCTCTTTAATGCCTCTGAAACCACACTTAAAGGCTTCCCCCTGAGCTTGGCAGATAGAGTGAAGTGGAGGGGCTTCAATGCCAAGCCATAAGAACAGTCCATAGTGAGGTTTTCAGAAGGGTTGCTCTCAAAGCTGCATTGGTGGATTAGGATGGCCGTGAACAGAAATATCTGGACCTTAGCGATCTGGTCACCGATGCATCTCCTCTTCCCGATAGAGAAGATCATCACACTGCTGGTCAGATCCCTGTCTATCATGCCATCCTCATCCAGGAAGCGCGAGGGGTCAAAGACGTGAGGATCCTTCCACTTCTTCTCGTCGTGATTGACAGACCACTGGTTCACGAAGACCACAGTGTCCTTGGGGATGTGGAGGCCGTCGATTGTCACGTCAGAGGTGGTGGAGTGGGGGATCGTCACTGGTACAAAGCTGGTGAAGCGCATGGTCTCGTAGATGAAGGCTTCCAGGTAGGCCAGACTGCCCTTGTCCTCGATGGTGGGAAGCCTGTCTCTTCCCACGACTTTGTCAATCTGCTCTTGCAGTTTAGTTTGGATGTTGGGGTATTTTACCAAAAGAAGGAGGATCCACTGCATAGCTGTTGAAATGGTGTCTTGCCCAGCACCCATGAGATCTGTGACAGTTCCCTCAACATGCTCTTTGGTAAGTCCCTTCTTGCTGCCACTTCCATGTTCTATGATACCGATGAAGGCATCACTCATGTCTCGCGTTACCTCTGGGTCATACGTTTCTCTGTGTNNNNN
>TU187011
TGTTGGCTGTggttagaaaaacaacaattctGTAATTAAAGCAGCCATTCCTTTACAttgccaaattaattaattcattttttaaccaATACTCACTTGAGTGTTATCAGCATCCTGCAGTCTGTTTGAAATATAGATGCCTGAGGACAATATTAGCAATATCATCTCTTTAATGCCTCTGAAACCACACTTAAAGGCTTCCCCCTGAGCTTGGCAGATAGAGTGAAGTGGAGGGGCTTCAATGCCAAGCCATAAGAACAGTCCATAGTGAGGTTTTCAGAAGGGTTGCTCTCAAAGCTGCATTGGTGGATTAGGATGGCCGTGAACAGAAATATCTGGACCTTAGCGATCTGGTCACCGATGCATCTCCTCTTCCCGATGGAGAAGATCATCACACTGCTGGTCAGATCCCTGTCTATCATGCCATCCTCATCCAGGAAGCGCGAGGGGTCAAAGACGTGAGGATCCTTCCACTTCTTCTCGTCGTGATTGACAGACCACTGGTTCACGAAGACCACAGTGTCCTTGGGGATGTGGAGGCCGTCGATTGTCACGTCAGAGGTGGTGGAGTGGGGGATCGTCACTGGTACAAAGCTGGTGAAGCGCATGGTCTCGTAGATGAAGGCTTCCAGGTAGGCCAGACTGCCCTTGTCCTCGATGGTGGGAAGCCTGTCTCTTCCCACGACTTTGTCAATCTGCTCTTGCAGTTTAGTTTGGATGTTGGGGTATTTTACCAAAAGAAGGAGGATCCACTGCATAGCTGTTGAAATGGTGTCTTGCCCAGCACCCATGAGATCTGTGACAGTTCCCTCAACATGCTCTTTGGTAAGTCCCTTCTTGCTGCCACTTCCATGTTCTATGATACCGATGAAGGCATCACTCATGTCTCGCGTTACCTCTGGGTCATACGTTTCTCTGTGTNNNNN

Function

NR:

description
PREDICTED: cytochrome P450 1B1-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU187010 True 926 lncRNA 0.47 2 6207353 6214760
TU187011 False 926 lncRNA 0.47 2 6207353 6214760

Neighbor

gene id symbol gene type direction distance location
AMCG00000185 NA coding upstream 37265 6157794 ~ 6170088 (+)
AMCG00000186 dnajc17 coding upstream 98216 6098493 ~ 6109137 (+)
AMCG00000174 NA coding upstream 173089 6031289 ~ 6034264 (+)
AMCG00000173 NA coding upstream 213685 5984559 ~ 5993668 (+)
AMCG00000165 NA coding upstream 240247 5939465 ~ 5967106 (+)
AMCG00000183 NA coding downstream 64788 6279548 ~ 6283057 (+)
AMCG00000181 NA coding downstream 142368 6357128 ~ 6364974 (+)
AMCG00000202 actc1a,actc1,act2,LOC105024319,LOC100194557 coding downstream 343082 6557842 ~ 6562820 (+)
AMCG00000200 NA coding downstream 349591 6564351 ~ 6574765 (+)
AMCG00000199 scg5,LOC107721259 coding downstream 361519 6576279 ~ 6587927 (+)
G148609 NA non-coding upstream 59068 6147922 ~ 6148285 (+)
G148519 NA non-coding upstream 162029 5851645 ~ 6045324 (+)
G148545 chp1 non-coding upstream 177576 6018043 ~ 6029777 (+)
G148468 actn1,LOC100696265,LOC101469024,LOC106600942 non-coding upstream 487872 5715593 ~ 5719481 (+)
G148459 NA non-coding upstream 528733 5677983 ~ 5678620 (+)
G148631 cyp1c1,cyp1c2,cyp1c3,LOC106610849 non-coding downstream 996 6215756 ~ 6216459 (+)
G148656 NA non-coding downstream 91868 6306628 ~ 6306867 (+)
G148764 NA non-coding downstream 708534 6923294 ~ 6927254 (+)
G148768 NA non-coding downstream 718540 6933300 ~ 6935160 (+)
G148791 NA non-coding downstream 877265 7092025 ~ 7092460 (+)
AMCG00000175 NA other upstream 195956 6000911 ~ 6011397 (+)
AMCG00000166 srsf5,LOC106602985,LOC106611464 other upstream 319326 5881023 ~ 5888027 (+)
AMCG00000142 NA other upstream 753147 5435158 ~ 5454206 (+)
AMCG00000146 NA other upstream 866803 5334513 ~ 5340550 (+)
AMCG00000145 NA other upstream 892400 5307190 ~ 5314953 (+)
AMCG00000201 NA other downstream 254585 6469345 ~ 6474232 (+)
AMCG00000198 LOC106586563 other downstream 286133 6500893 ~ 6520863 (+)
AMCG00000216 srsf5b,srsf5,LOC107093669,LOC100707620,LOC102304179,LOC102202212,LOC103457348,LOC105936365,LOC105024333,LOC107756601,LOC107602033,LOC103029514,LOC103359433,LOC108233477 other downstream 1075906 7290666 ~ 7296965 (+)
AMCG00000215 max,LOC107668248,LOC103457350 other downstream 1099112 7313872 ~ 7324451 (+)
AMCG00000217 gpx2 other downstream 1144518 7359278 ~ 7362707 (+)

Expression


Co-expression Network