G148692 (LOC107756589,LOC107552947,LOC107682372,LOC100534413,LOC105015666)


Basic Information

Item Value
gene id G148692
gene name LOC107756589,LOC107552947,LOC107682372,LOC100534413,LOC105015666
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 6556705 ~ 6563305 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU187110
TTTTTTATGCATTATGTTGTGTATTCAAAGGTAAATCAAAAAGGAGCACAGTGGATTACTGTTACAAGcatctatttttattacaacagtacatgtatatacagtaaacgGCACAGTACAAATGCAGACAGAGGAGTGGGTGGAAGAGGGTTGGAGGTTTAGAAGCATTTCCTGTGGACGATGGAGGGACCTGCTTCATCATACTCCTGCTTGCTGATCCACATCTGCTGGAAGGTGGACAGGGAGGCCAGGATGGAGCCGCCGATCCAGACAGAGTACTTACGCTCAGGGGGAGCAATGATCTATGGAGAGAAAAGGAGATTGGAACATTAGGGGAGTAAGTTCACAGTTCCCTCTTAGGCAAACagcaattttaaacaaaacaagacttcTCCTTCACGGTGAATAGACTGAACAAGCTACAGAAGAGATTTCCCTATTGGAAATATTGCTTGTTCCCTTGGACATGTGGATCCATTATATTTCTAGGATATGTCGCTCACCTTGATCTTCATGGTGCTGGGAGCCAGGGCGGTGATTTCCTTCTGCATGCGGTCAGCAATACCAGGGTACATGGTGGTACCACCGGACAGGACGTTGTTGGCGTACAGGTCCTTGCGGATGTCAATGTCGCACTTCATGATGGAGTTGTAGGCAGTCTCATGGATACCAGCAGACTCCATACCNNNNNNNNAAGGCTGGAAGAGGGTCTCTGGGCAGCGGAAACGCTCATTGCCAATGGTGATGACCTGGCCGTCAGGCAGCTCGTAGCTCTTCTCCAGGGAGGAGGAAGAAGCAGCAGTGGCCATCTCATTCTCAAAGTCCAGAGCCACATAGCACAACTTCTCCTTGATGTCGCGCACGATCTCACGCTCAGCtGGTGACGAAAGAGTAGCCTCTCTCAGTCAGGATCTTCATCAGGTAGTCAGTCAGGTCTCTGCCGGCCAGATCCAGACGCATGATGGCATGAGGCAGGGCATAGCCTTCATAGATGGGTACGTTGTGGGTCACACCATCACCAGAGTCCAGCACAATACCTGCAGACACCAAAAACACCAGTAGAGAGTCACAATACTGTAGTCAGGACACCTTACATAGGTTACCTTGTAGATGTATTGTTGGTGACAGTCATCCAaccactgcatttaaaaaaggacaccaaaaatctctctctatctaaTACGCTAGTAACTAATTTCTGTAAATTGTAATCTTTATACACCCCGTGTCCATATtacttattattgttgtaaACTTAGTAATGCTacctgctttttaaattatttgatcaATCAGAATACAAActacaagtgtttattttttgctttaaatactgttgttttcttcttctaacTATTAAGCATGTGACTTATGTGCTGTCTGGAGATACTGACCAGTGGTACGGCCAGAGGCGTACAGGGACAGCACAGCCTGGATGGCCACATACATGGCAGGGACGTTGAAGGTCTCAAACATGAtctgGTCATCTTCTCTCTGTTGGCCTTGGGGTTGAGGGGGGCctcagtgagcagggtggggTGCTCCTCAGGGGCCACACGCAGCTCATTGTAGAAGGTGTGGTGCCAGATCTTCTCCATGTCGTCCCAGTTGGTGATGATGCCGTGCTCAATGGGGTACTTCAGGGTGAGGATACCCCTCTTGCTCTGGGCTTCATCTCCTACGTAGCTGTCCTTCTGACCCATACCCACCATGACACCTGGTGGCGGGGCCTTCCGACGATGGAAGGGAAGACAGCACGGGGAGCGTCATCTCCGGCAAATCCAGCCTTGACCAAGCCAGAGCCGTTGTCGCACACAAGGGCGGTGGTCTCGTCGTCGTCACACATGATTGGTCTGTGCTGGGATGGTCTGCGAACAGGACAGCAATGCTTAAACTTCGGAGACAATGACCCACCAGTGCTGACCAAAGTTGTATCGCAAGACTGATGCTTCCACTGGGACGAAGGCTGAAGGAGAAAGGGGCTCCTTAAATAAGCCTGGTACAGAGGGTCTGGGAGGTGGGGCCTGGAGTTCACACAAGTCCAAATAAGAgctgttag
>TU187112
TTTTTTATGCATTATGTTGTGTATTCAAAGGTAAATCAAAAAGGAGCACAGTGGATTACTGTTACAAGcatctatttttattacaacagtacatgtatatacagtaaacgGCACAGTACAAATGCAGACAGAGGAGTGGGTGGAAGAGGGTTGGAGGTTTAGAAGCATTTCCTGTGGACGATGGAGGGACCTGCTTCATCATACTCCTGCTTGCTGATCCACATCTGCTGGAAGGTGGACAGGGAGGCCAGGATGGAGCCGCCGATCCAGACAGAGTACTCTTGATCTTCATGGTGCTGGGAGCCAGGGCGGTGATTTCCTTCTGCATGCGGTCAGCAATACCAGGGTACATGGTGGTACCACCGGACAGGACGTTGTTGGCGTACAGGTCCTTGCGGATGTCAATGTCGCACTTCATGATGGAGTTGTAGGCAGTCTCATGGATACCAGCAGACTCCATACCNNNNNNNNAAGGCTGGAAGAGGGTCTCTGGGCAGCGGAAACGCTCATTGCCAATGGTGATGACCTGGCCGTCAGGCAGCTCGTAGCTCTTCTCCAGGGAGGAGGAAGAAGCAGCAGTGGCCATCTCATTCTCAAAGTCCAGAGCCACATAGCACAACTTCTCCTTGATGTCGCGCACGATCTCACGCTCAAGTGGTGACGAAAGAGTAGCCTCTCTCAGTCAGGATCTTCATCAGGTAGTCAGTCAGGTCTCTGCCGGCCAGATCCAGACGCATGATGGCATGAGGCAGGGCATAGCCTTCATAGATGGGTACGTTGTGGGTCACACCATCACCAGAGTCCAGCACAAACCAGTGGTACGGCCAGAGGCGTACAGGGACAGCACAGCCTGGATGGCCACATACATGGCAGGGACGTTGAAGGTCTCAAACATGAtctgaaacagagagagagctttTAGTGTATTCTGTACTGTAGGCCATTACAGTgcaaacagaaaatgattgtAGTGCTCCCTGACACTCTGACAGCCAGGCTGCTGTGATCTGTTTACCTGGGTCATCTTCTCTCTGTTGGCCTTGGGGTTGAGGGGGGCctcagtgagcagggtggggTGCTCCTCAGGGGCCACACGCAGCTCATTGTAGAAGGTGTGGTGCCAGATCTTCTCCATGTCGTCCCAGTTGGTGATGATGCCGTGCTCAATGGGGTACTTCAGGGTGAGGATACCCCTCTTGCTCTGGGCTTCATCTCCTACGTAGCTGTCCTTCTGACCCATACCCACCATGACACCCTGa
>TU187113
TTTTTTATGCATTATGTTGTGTATTCAAAGGTAAATCAAAAAGGAGCACAGTGGATTACTGTTACAAGcatctatttttattacaacagtacatgtatatacagtaaacgGCACAGTACAAATGCAGACAGAGGAGTGGGTGGAAGAGGGTTGGAGGTTTAGAAGCATTTCCTGTGGACGATGGAGGGACCTGCTTCATCATACTCCTGCTTGCTGATCCACATCTGCTGGAAGGTGGACAGGGAGGCCAGGATGGAGCCGCCGATCCAGACAGAGTACTTACGCTCAGGGGGAGCAATGATTTGATCTTCATGGTGCTGGGAGCCAGGGCGGTGATTTCCTTCTGCATGCGGTCAGCAATACCAGGGTACATGGTGGTACCACCGGACAGGACGTTGTTGGCGTACAGGTCCTTGCGGATGTCAATGTCGCACTTCATGATGGAGTTGTAGGCAGTCTCATGGATACCAGCAGACTCCATACCNNNNNNNNAAGGCTGGAAGAGGGTCTCTGGGCAGCGGAAACGCTCATTGCCAATGGTGATGACCTGGCCGTCAGGCAGCTCGTAGCTCTTCTCCAGGGAGGAGGAAGAAGCAGCAGTGGCCATCTCATTCTCAAAGTCCAGAGCCACATAGCACAACTTCTCCTTGATGTCGCGCACGATCTCACGCTCAGCtagaggggggggggtaaaGAGAATTGAAGCAATGAATAATGAACGTAGGAACGACCTACAGAAGCAAAAGTCTCCTTACACTCCTTCTGAATGATATAATATAATCACTTTTGTAAAACTGTGGTTAATGATAACGTAGCTGACTTCGCTATGGTTCTCTTTACCAGTGGTGACGAAAGAGTAGCCTCTCTCAGTCAGGATCTTCATCAGGTAGTCAGTCAGGTCTCTGCCGGCCAGATCCAGACGCATGATGGCATGAGGCAGGGCATAGCCTTCATAGATGGGTACGTTGTGGGTCACACCATCACCAGAGTCCAGCACAATACCTGCAGACACCAAAAACACCAGTAGAGAGTCACAATACTGTAGTCAGGACACCTTACATAGGTTACCTTGTAGATGTATTGTTGGTGACAGTCATCCAaccactgcatttaaaaaaggacaccaaaaatctctctctatctaaTACGCTAGTAACTAATTTCTGTAAATTGTAATCTTTATACACCCCGTGTCCATATtacttattattgttgtaaACTTAGTAATGCTacctgctttttaaattatttgatcaATCAGAATACAAActacaagtgtttattttttgctttaaatactgttgttttcttcttctaacTATTAAGCATGTGACTTATGTGCTGTCTGGAGATACTGACCAGTGGTACGGCCAGAGGCGTACAGGGACAGCACAGCCTGGATGGCCACATACATGGCAGGGACGTTGAAGGTCTCAAACATGAtctgaaacagagagagagctttTAGTGTATTCTGTACTGTAGGCCATTACAGTgcaaacagaaaatgattgtAGTGCTCCCTGACACTCTGACAGCCAGGCTGCTGTGATCTGTTTACCTGGGTCATCTTCTCTCTGTTGGCCTTGGGGTTGAGGGGGGCctcagtgagcagggtggggTGCTCCTCAGGGGCCACACGCAGCTCATTGTAGAAGGTGTGGTGCCAGATCTTCTCCATGTCGTCCCAGTTGGTGATGATGCCGTGCTCAATGGGGTACTTCAGGGTGAGGATACCCCTCTTGCTCTGGGCTTCATCTCCTACGTAGCTGTCCTTCTGACCCATACCCACCATGACACCTGGTGGCGGGGCCTTCCGACGATGGAAGGGAAGACAGCACGGGGAGCGTCATCTCCGGCAAATCCAGCCTTGACCAAGCCAGAGCCGTTGTCGCACACAAGGGCGGTGGTCTCGTCGTCGTCACACATGATTGGTCTGTGCTGGGATGGTCTGCGAACAGGACAGCAATGCTTAAACTTCGGAGACAATGACCCACCAGTGCTGATCAGGACAGCGTAACAGAGAAAGCAAACACGTCATTTCCCCAATACCTACAAATAAAGGGTATTTTTTCGTCTTCTGTCTATTCTgttattttcagtgttgtacttaaaatagttatattttcATAGCCTGTAAATAATGGGAACTTAGTTTGGTAATACATGTGCTTTATGTATCAGGACCCTAGTAAACaagtttaaacataaaatacacataatatatatttaagatattaAAGCCAGCTACTTCTATAACCTAACAATGATTTTCCCGACGAATTATGATATCAGTTAGCCTATTATtacttttctaaatataaaatatttgatgaagataaatataaattaaatcctAATGAAGCATGCTAATTTGTTATACACCAAAGTAAATGTATACcaagtaaatacaaatgcatcTTATcttag
>TU187117
TTTTTTATGCATTATGTTGTGTATTCAAAGGTAAATCAAAAAGGAGCACAGTGGATTACTGTTACAAGcatctatttttattacaacagtacatgtatatacagtaaacgGCACAGTACAAATGCAGACAGAGGAGTGGGTGGAAGAGGGTTGGAGGTTTAGAAGCATTTCCTGTGGACGATGGAGGGACCTGCTTCATCATACTCCTGCTTGCTGATCCACATCTGCTGGAAGGTGGACAGGGAGGCCAGGATGGAGCCGCCGATCCAGACAGAGTACTTACGCTCAGGGGGAGCAATGATCTATGGAGAGAAAAGGAGATTGGAACATTAGGGGAGTAAGTTCACAGTTCCCTCTTAGGCAAACagcaattttaaacaaaacaagacttcTCCTTCACGGTGAATAGACTGAACAAGCTACAGAAGAGATTTCCCTATTGGAAATATTGCTTGTTCCCTTGGACATGTGGATCCATTATATTTCTAGGATATGTCGCTCACCTTGATCTTCATGGTGCTGGGAGCCAGGGCGGTGATTTCCTTCTGCATGCGGTCAGCAATACCAGGGTACATGGTGGTACCACCGGACAGGACGTTGTTGGCGTACAGGTCCTTGCGGATGTCAATGTCGCACTTCATGATGGAGTTGTAGGCAGTCTCATGGATACCAGCAGACTCCATACAATGAAGGAAGGCTGGAAGAGGGTCTCTGGGCAGCGGAAACGCTCATTGCCAATGGTGATGACCTGGCCGTCAGGCAGCTCGTAGCTCTTCTCCAGGGAGGAGGAAGAAGCAGCAGTGGCCATCTCATTCTCAAAGTCCAGAGCCACATAGCACAACTTCTCCTTGATGTCGCGCACGATCTCACGCTCAAGTGGTGACGAAAGAGTAGCCTCTCTCAGTCAGGATCTTCATCAGGTAGTCAGTCAGGTCTCTGCCGGCCAGATCCAGACGCATGATGGCATGAGGCAGGGCATAGCCTTCATAGATGGGTACGTTGTGGGTCACACCATCACCAGAGTCCAGCACAAACCAGTGGTACGGCCAGAGGCGTACAGGGACAGCACAGCCTGGATGGCCACATACATGGCAGGGACCTGGGTCATCTTCTCTCTGTTGGCCTTGGGGTTGAGGGGGGCctcagtgagcagggtggggTGCTCCTCAGGGGCCACACGCAGCTCATTGTAGAAGGTGTGGTGCCAGATCTTCTCCATGTCGTCCCAGTTGGTGTGGTGCCAGATCTTCTCCATGTCGTCCCAGTTGGTGATGATGCCGTGCTCAATGGGGTACTTCAGGGTGAGGATACCCCTCTTGCTCTGGGCTTCATCTCCTACGTAGCTGTCCTTCTGACCCATACCCACCATGACACCTGGTGGCGGGGCCTTCCGACGATGGAAGGGAAGACAGCACGGGGAGCGTCATCTCCGGCAAATCCAGCCTTGACCAAGCCAGAGCCGTTGTCGCACACAAGGGCGGTGGTCTCGTCGTCGTCACACATGATTGGTCTGTGCTGGGATGGTCTGCGAACAGGACAGCAATGCTTAAACTTCGGAGACAATGACCCACCAGTGCTGATCAGGACAGCGTAACAGAGAAAGCAAACACGTCATTTCCCCAATACCTACAAATAAAGGGTATTTTTTCGTCTTCTGTCTATTCTgttattttcagtgttgtacttaaaatagttatattttcATAGCCTGTAAATAATGGGAACTTAGTTTGGTAATACATGTGCTTTATGTATCAGGACCCTAGTAAACaagtttaaacataaaatacacataatatatatttaagatattaAAGCCAGCTACTTCTATAACCTAACAATGATTTTCCCGACGAATTATGATATCAGTTAGCCTATTATtacttttctaaatataaaatatttgatgaagataaatataaattaaatcctAATGAAGCATGCTAATTTGTTATACACCAAAGTAAATGTATACcaagtaaatacaaatgcatcTTATcttag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU187110 False 2059 lncRNA 0.49 7 6556705 6563305
TU187112 False 1259 TUCP 0.52 6 6558826 6563305
TU187113 True 2430 lncRNA 0.45 5 6557842 6563305
TU187117 False 2004 TUCP 0.47 8 6557842 6563305

Neighbor

gene id symbol gene type direction distance location
AMCG00000184 NA coding downstream 4375 6521027 ~ 6552330 (-)
AMCG00000182 NA coding downstream 76405 6475441 ~ 6480300 (-)
AMCG00000191 NA coding downstream 268359 6285009 ~ 6288346 (-)
AMCG00000187 NA coding downstream 277161 6260620 ~ 6279544 (-)
AMCG00000188 rad51 coding downstream 298505 6244719 ~ 6258200 (-)
AMCG00000205 NA coding upstream 35819 6599124 ~ 6624326 (-)
AMCG00000207 LOC106610840,LOC108430666,LOC105908184,LOC106586878 coding upstream 75274 6638579 ~ 6659202 (-)
AMCG00000206 NA coding upstream 106908 6670213 ~ 6671949 (-)
AMCG00000210 NA coding upstream 295701 6859006 ~ 6861428 (-)
AMCG00000192 chrm5,LOC103025843,LOC103374637,LOC101062455,LOC103136125,LOC106930617,LOC106940597 coding upstream 353369 6916674 ~ 6921676 (-)
G148610 NA non-coding downstream 408419 6147929 ~ 6148286 (-)
G148486 NA non-coding downstream 844829 5711019 ~ 5711876 (-)
G148417 NA non-coding downstream 1101216 5455246 ~ 5455489 (-)
G148416 NA non-coding downstream 1102457 5451000 ~ 5454248 (-)
G148400 cdca4 non-coding downstream 1176577 5377749 ~ 5380128 (-)
G148801 NA non-coding upstream 577057 7140362 ~ 7140968 (-)
G148962 NA non-coding upstream 1195377 7758682 ~ 7758963 (-)
G149002 NA non-coding upstream 1392667 7955972 ~ 7956264 (-)
G149030 NA non-coding upstream 1740514 8303819 ~ 8304215 (-)
G149068 NA non-coding upstream 1965762 8529067 ~ 8583456 (-)
AMCG00000190 cyp1c1,cyp1c3,cyp1c2,LOC107745367,LOC106610849 other downstream 340264 6214005 ~ 6216441 (-)
AMCG00000189 NA other downstream 346748 6207514 ~ 6209957 (-)
AMCG00000168 gchfr,LOC106583112 other downstream 402404 6150720 ~ 6154301 (-)
AMCG00000177 NA other downstream 489521 6045665 ~ 6067184 (-)
AMCG00000180 NA other downstream 544068 6004186 ~ 6012637 (-)
G148851 gpx2 other upstream 797917 7361222 ~ 7362692 (-)
G149011 NA other upstream 1532660 8095965 ~ 8106839 (-)
AMCG00000260 gpr137c,LOC107583456,LOC107693135,LOC107723581,LOC107564956,LOC107751764,LOC106610616 other upstream 2463035 9026340 ~ 9045855 (-)
AMCG00000270 gbg2,gng2,LOC108239039,LOC106603227,LOC107569409 other upstream 2606778 9170083 ~ 9188266 (-)
G149321 NA other upstream 2924574 9487879 ~ 9488609 (-)

Expression


Co-expression Network