G149077 (stxbp6)


Basic Information

Item Value
gene id G149077
gene name stxbp6
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 8669016 ~ 8739984 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU187575
TTCACGTCACCGCTGCTCCCAGCCGTGCAGGAGCGCCACAGCTCTCATCCCGCCCGGATCTGCGCCAGACACGGACACGGAGGCGCTGCGCTCCACTGCCGTACCACCGCGCCGCACTTTGGGGATTATTGAGGCTCCGACAGAGCGACATGGTCCCGTCAGagctgctcagataacagcatCCTCTCGACACCCGGGGCTTGATTGAGGCTGTCGGAGCCCGGCGGAGCCCGGCGGAGCCCGGCGCGACTGTTCTCCACGTATAAGACAGCTGCTCGCCCCGTGCCCAGCGCAGAGATGAGTGCCAAATCAGCCATCAACAAGGAGATTTTTGCACCGCATGATGAGAGGATGCTGGGAGCCGTTCAGGTCAAGAGAAGAACGAAGAAAAAGATCCCCTTCTTAGCCACTGGAGGCCAGGGAGACTATATGACTTTTATATGCTTGTCAGTGACAAACAAGAAGCCTTCTCAGGTCTCCATTACCAAGGTCAAAAAGTTTGAAGACTCATCAGCGTTTGTAAGAAGATCCCAGTGGACGATTGATCAGCTCCGACAGGTGAATGGCATCGACCCAAATCGAGTAACAGCATATTACATTCAGCCGCAGACAGTGTGACCAGCGCAGTACAGAAAGCTAGCCAGGCTCTGAACGAGCGTGGGGAGAGACTAGGGCGGGCAGAGGAGAAGACGGGCGATATGATGAACAGTGCCCAGCAGTTTGCAGAAACGGCACATAAGCTTGCTATGAAGCACAAATGTTGAACCGTTGCCAAATTTTTGGGGATCTACCAAGGGGTGAAATGCACAGGCCTTTTGGGACGTGCTTTTgattttatccttttttttcttgatctttaatttgcattgttgGACATTcagtgtttcttaaaaaaaaagaaaaaaaaataagaaaaaaaatagatccTAACCAGGTGAAAGAAGAGTGAATGAGTTGGAGGTACAACTCTGAAGTTCGGTCAGTTCCCTCTCCTCCATTGGCCAGGAAGTCATGCCACATCAACCTCCCACAATGGAAGACCGGTCCCTCAGTTTCATCCAAATGGCAGTGAAAGGAATCGgacatttgctttttcttttgcccAATCTGGGGAAGGGAAAACACCCCCATGTCACCTGACTTTGTGCGTCACATAATACAAATGTGGTTCATGTGTATTTACCAGTGTACCATCCACAAAAGAAGAATGGACCCAACACTATGTAAAACAGGAATACAATACACAAGTAGGGGTTTGTTTTTGAAGTTGTTCTTTAATAGTCTTCATGAAGAAAGAAGGTGATTGTGtgcagcacacacagcagtgGAGATGGATGCCTTATTCTGCAGACCAGACCTCAATACTGGTCATCAGCTACAGTATGTTGCCTATACTGTGTGACTGtaagtaatatttttaatttatcgtaagaagccactttctactactaaataaacaaaaacacgaTGGGGTACGGGTTTGTAATTTGAGCTTCGTGGGTAGGTCTAAATTTGGATTAGGTGTAGGTCATAGTGAAGTGGTAAATATGCCCTCAAGCATATATAACCAAAACCCATATCAAACACCTTTATTTTCATCTCGAAAAGTGCAATGATTCTAAATCGGTGccttttaatactttaaaaatacactcaACATTTGTTACCCCAGcttataaatttaaatgtatgtccTAACATAACATGCATGGGGACCCAGGGTATCATTGCTTCctgaaagatgaaagtctatcACTAAACCAACATGTACCAAATGAGAGCATCCTCCTGTGCTAAATACAATTTCTGTACTTATTCATAAAgatgtgtattattaatatagtaTAACTTCTGCAATTAAGTTGTAATGAAAGTGTTGGCACTCAAGTGAGAGAAGAAGCTGGTGAAatactactgtttttttttactttttaacaaaGCATGACTAATATTTCATGTATTCAGCTCAGAGACTAAGCTTTTGGTGTTAGGGTTAAGGCTAATCTTATTCACTCTTTATGTAAATCCAAAAAATGTGATGGgaccactgttttttttaaacattttttgtttaaaataacaatgcaatCCAGAACAATGCTACAAATTGTGCACAGCACGCGTCTACAGTATGCGCACGTCGACCcctgtttaatttgctttatattttgtgGAAAGGCTTGTAAAGAGAGTGCGGTTCCCAATTTTCAACACTAGATGGAAACCTTAGGCAAGCCTTCAAGGTGCTTTTTTTTCTCGGATCAGAATATTTTTcgttgttttttattaatttatttcactgctCATATgatttagggccggattaaatcaaaattttgacccacccgctaatagaaaactacaaacctgtacatcatagcggttacatttctgattagaagaaagtggcatcttactaaaaatgcagagtacagttctgtagttttctattagcgggtgggtcaaagttttgatttaatcccagcctttaGTCTCAGATTATTCTGCAGATCTGTTATGTATTAAATGGGttctatataatatacattcaGCCAAATTCGTAACTGCATATCAGAAATGTAAACAGTCATCCTACATTTGATAAACATGCTTTGAGAGTTATTACCATGGCCAGAATCCAACCTAGACCTTCAGTCACAGACAGTCTAGGGGTCTCAATGCCACTGTGACGGCTGCAGGGGCATCACTGCTCTGAGACCAGTGCCAGCTTCACATtacttcttttattttaataaagtagaTAAAGCTAGCCATGAACTGGGTGAAACGAAAGGACCTAATCCTAGGCAATCATAATGGGACGGAGCAGATCATAATTATTCCACTTCTTAGGTATTATACAAGGATATCCACAGTAATGCAGGTTAATGTTTCATATGAaagaatgtatttgtaaaatgtcaagtTCAACTAGTTAGTTTAttctttatattgtatttctgtaagaaagaaagataCAGAACAAGAAACAAACCATGAACTGTGGGCTGCATTTAGACTTCACCCTCATCAAGtatatcgatatatatatatataatgccaaAATTGTAATACTGCTGGTGTGTTTCTGTTGTGATGATTTGCTGGAGATGTGCACACTAGTGTGTGCTGTACAATTagtctgtgctgttctgtgagaCAAGTGGGGCTCTTGTTGCAATTTTTAGGTCCTCATTAAACATTGTAA

Function

symbol description
stxbp6 Is expressed in notochord and otic vesicle. Orthologous to human STXBP6 (syntaxin binding protein 6).

NR:

description
PREDICTED: syntaxin-binding protein 6

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU187575 True 3208 lncRNA 0.41 6 8669016 8739984

Neighbor

gene id symbol gene type direction distance location
AMCG00000240 NA coding downstream 754584 7898317 ~ 7914432 (-)
AMCG00000239 NA coding downstream 776866 7886490 ~ 7892150 (-)
AMCG00000226 NA coding downstream 821672 7841415 ~ 7847344 (-)
AMCG00000224 NA coding downstream 900756 7760630 ~ 7768260 (-)
AMCG00000225 NA coding downstream 915450 7746823 ~ 7753566 (-)
AMCG00000242 fermt2 coding upstream 11693 8751677 ~ 8771216 (-)
AMCG00000243 NA coding upstream 48121 8788105 ~ 8814916 (-)
AMCG00000241 bmp4 coding upstream 113235 8853219 ~ 8863951 (-)
AMCG00000257 gch1 coding upstream 206679 8946663 ~ 8961375 (-)
AMCG00000265 NA coding upstream 222984 8962968 ~ 8977588 (-)
G149068 NA non-coding downstream 85560 8529067 ~ 8583456 (-)
G149075 NA non-coding downstream 93930 8573082 ~ 8575086 (-)
G149030 NA non-coding downstream 364801 8303819 ~ 8304215 (-)
G149002 NA non-coding downstream 712752 7955972 ~ 7956264 (-)
G148962 NA non-coding downstream 910053 7758682 ~ 7758963 (-)
G149087 NA non-coding upstream 3887 8743871 ~ 8744499 (-)
G149125 NA non-coding upstream 111332 8851316 ~ 8851779 (-)
G149132 NA non-coding upstream 142664 8882648 ~ 8945588 (-)
G149268 pygl,LOC104938237 non-coding upstream 621348 9361332 ~ 9363435 (-)
G149322 NA non-coding upstream 750285 9490269 ~ 9490806 (-)
G149011 NA other downstream 562177 8095965 ~ 8106839 (-)
G148851 gpx2 other downstream 1306324 7361222 ~ 7362692 (-)
G148692 LOC107756589,LOC107552947,LOC107682372,LOC100534413,LOC105015666 other downstream 2105711 6556705 ~ 6563305 (-)
AMCG00000190 cyp1c1,cyp1c3,cyp1c2,LOC107745367,LOC106610849 other downstream 2452575 6214005 ~ 6216441 (-)
AMCG00000189 NA other downstream 2459059 6207514 ~ 6209957 (-)
AMCG00000260 gpr137c,LOC107583456,LOC107693135,LOC107723581,LOC107564956,LOC107751764,LOC106610616 other upstream 286356 9026340 ~ 9045855 (-)
AMCG00000270 gbg2,gng2,LOC108239039,LOC106603227,LOC107569409 other upstream 430099 9170083 ~ 9188266 (-)
G149321 NA other upstream 747895 9487879 ~ 9488609 (-)
G149341 sos2 other upstream 800627 9540611 ~ 9541259 (-)
G149395 NA other upstream 1016397 9756381 ~ 9766794 (-)

Expression


Co-expression Network