G149324


Basic Information

Item Value
gene id G149324
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 9494159 ~ 9496132 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU187891
GCCAGTATATATTAGACCCTTTCAAAGGAATTCATATAAAATGCCATGGGACTCACATTCTGTTTGTGGCAGAAGTTGACGGCCTGGAGGGTCTGCCACGTTATACTCTTCACCAGGTGCTCTGGAACCctgaggaagagaggagagaggccAGGGGGACACTGGTCATTTTTGCTTgctttaacatttattttgcctATATTATTACGCAGCAAATATGCCATTCTCGGCCATCTCAGATGAGAGCGTTATTTGTCCAGGAGACAACGGTCTACGCATGGTTTTCTGTAACAGCACGAGCACCGAATACACGCGTTGGCATAAAAACTAAACGGCCCCGGCGACGTCCTCCTCGTTATTTTATAGTGCAGTGTACATAGCAACTTCACAGCTGCTGCACAGATGTAGTAAacatctgtaattaaaaatgtgcctgCAGGCTTTGCGGAGACTGTAAAGAGGCCGATATAAAAGgcaaggaaaaaagaaagcttGCAAGGTCATTAACTTTTATGGGTTTTTCTGGGAACTGTATTACTGTGAAAAGCCCATCTGACAGTCATTTCCAGCTCCCTGCATTCACCTTACCTTCAGATCCCTTTCAGGAGCCTAAAGGGGCCGTCTGCGTTTCTATAAAAGCTCTCCACAGAAAGAGCTGGAGCTCGTGGTAAAAATGCACGAATCAGAGCAGCTACTCAACACAAAGCAGACGGCTGTGCCAGACTAGCACTGCCTTCTTCAGCTATGCCTTCAGAGCAACAAGTGAGGCTAGAAACGACCAGCGCTGGGTAACACAGTAAACACTATGAATTCCCAAATCAGATCTGATGTATGGCACGTTCTCGGTCTCTATTAGACCTGCCCATCATTTACAATGAGGTGCCTGCTATACTCCCTCTCCGATCTGAATCACACCAACAGTGCAGAGGGTTTGAAAACCAAAACGTTAATTGAAATACGACCAAATCCCACATACGCTGAGCAGAGAACACTACCAATTTAGACACtctaaaaaaaagtaaacaaattgcATCCTGATGAATATAAAAGTAGACATTGCGTGTTAAAAACTTGAGTTGGAGCCTAACTTGTGTTGTGTAGGAGCAGCTCATTGTATGGACGCACATTGTGTTAAAGCTTCCTGAATGCAGGTGCTACAAGTGGAACAAAATTAAGtcaggagcaggaggaggaaagagaaaaagtaaaacaatagcTTTTTGCTTAACTCTGCAAAAACCTAATAAAAAAGCCCTGGCCctccccttttcttttcttgtcctTTCTTGGCCCATTATCAGCCAAAGACAGGCTGGCCTGACGCGCCCGTCGTAAACGCAGCTGCTCCCAACACTGTCGCTTTGTTGCCCGGGGACCCCCATCAATCAGCATTGTCCATCCCGCTGGCTAAATCGAGCCTCGTGATCGGTAATTTACGCAGCGCCCGGCCTCCCCCTGATTGATGACGCCGCGGAGCCCAGCTGCCAGGAGCGACCCACAGAGAGCCCTGTAAACTGAAACAAGATCGTAACTCAGCGCCTGTCGGGCAAGACAAACACCGCAAGTGCCGGATGCTCTGTGCCCACTGTCCCCGTCCGTCGCTGCGCGGCAATATTGACCGGCCTGGCATTTGGGAGTGTATAACCATAAACATGCCGCAACAAACAGCACACATTCCATGGCAACAGCTAAACAATGCTAGCTGTCAGCAGATAAAGTGTGCTTCCCAGAGCGACGCCCCACACAGGGGAAAAATACGGGCACCTTGCTGCTGCTGGACCGACACACGGGCATCAGTGGCAGCGATTTGTCACCCccgccctccctccctcaaGAGCATCAGCAGGCCTTACCCTCGGGGGTAGCGGTCGAGCTCGTTGAGGACGGTGTGGTCGCAGTACTCAAACACCAGGTGCAGCTTGCGCTTTCGCCGGAACACTTCGATCAGGTTAACCAGGTTGGAGTGCTTCAATT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU187891 True 1974 lncRNA 0.49 1 9494159 9496132

Neighbor

gene id symbol gene type direction distance location
AMCG00000279 atl1 coding downstream 54823 9427499 ~ 9439336 (-)
AMCG00000276 NA coding downstream 123380 9364170 ~ 9370779 (-)
AMCG00000275 NA coding downstream 204947 9284358 ~ 9289212 (-)
AMCG00000272 frmd6,LOC102777289 coding downstream 283508 9194617 ~ 9210651 (-)
AMCG00000269 cunh14orf166,zgc:56576,LOC107725214,LOC107680004,LOC107693089,LOC107583671 coding downstream 328522 9157860 ~ 9165637 (-)
AMCG00000289 NA coding upstream 2588 9498720 ~ 9501150 (-)
AMCG00000290 NA coding upstream 56110 9552242 ~ 9553191 (-)
AMCG00000291 cnih1,LOC107736564,LOC107683416,LOC107553211,LOC106611446 coding upstream 67263 9563395 ~ 9570360 (-)
AMCG00000284 ccdc177,LOC103144771,LOC106922444,LOC102219675,LOC102789726 coding upstream 267483 9763615 ~ 9765768 (-)
AMCG00000309 NA coding upstream 425187 9921319 ~ 9925304 (-)
G149322 NA non-coding downstream 3353 9490269 ~ 9490806 (-)
G149268 pygl,LOC104938237 non-coding downstream 130724 9361332 ~ 9363435 (-)
G149132 NA non-coding downstream 548571 8882648 ~ 8945588 (-)
G149125 NA non-coding downstream 642380 8851316 ~ 8851779 (-)
G149087 NA non-coding downstream 749660 8743871 ~ 8744499 (-)
G149325 NA non-coding upstream 101 9496233 ~ 9496585 (-)
G149326 LOC107379822 non-coding upstream 715 9496847 ~ 9497214 (-)
G149332 NA non-coding upstream 13993 9510125 ~ 9511350 (-)
G149338 NA non-coding upstream 38582 9534714 ~ 9534919 (-)
G149339 NA non-coding upstream 40180 9536312 ~ 9536536 (-)
G149321 NA other downstream 5550 9487879 ~ 9488609 (-)
AMCG00000270 gbg2,gng2,LOC108239039,LOC106603227,LOC107569409 other downstream 305893 9170083 ~ 9188266 (-)
AMCG00000260 gpr137c,LOC107583456,LOC107693135,LOC107723581,LOC107564956,LOC107751764,LOC106610616 other downstream 448304 9026340 ~ 9045855 (-)
G149011 NA other downstream 1387320 8095965 ~ 8106839 (-)
G148851 gpx2 other downstream 2131467 7361222 ~ 7362692 (-)
G149341 sos2 other upstream 44479 9540611 ~ 9541259 (-)
G149395 NA other upstream 260249 9756381 ~ 9766794 (-)
G149402 NA other upstream 335623 9831755 ~ 9832133 (-)
G149441 NA other upstream 434838 9930970 ~ 9935550 (-)
AMCG00000300 NA other upstream 533595 10029727 ~ 10059000 (-)

Expression


Co-expression Network