G149332


Basic Information

Item Value
gene id G149332
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 9510125 ~ 9511350 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU187901
tttaaatgttaatgtactGTCAAGTTCAGGGTTTTCTCTGCTGACCAATCAGAGCCACGTAAACCATCAGTCAAAtcttgtgtttatgtatttattacccAGTTTTTTACAGAGATAATTAATAacatcacaataataaatacataaataaaagagaaaaaaaagaaaaacatcatgaaataaacatgaaaccgaaaaaaaacacattacaataatagTCAAGCACATCTGGGCTGTGAAGGTTTATATGAAGCTGGGAGCCCATTGGGCGCAAACCCAGGGACACAGCAGGGGGCAACTCCCGGGCCTGGTTTTTGCCTTGCAGGTCTATTTCCTGCAGCGCTACATTAAGCAGTGGCAGTAAGTCCGAGACCCGCCCTGGGCCACTGAGTTGAACAGGGCTTTGAAACTTCTCCAGCTGCTGGTCCTTGCCGAAGCAACGGGGTCTGTAAACGTCTGTGTGGGGCCCAGCATCTCCCCTTCAGTTTCCTTTGAAACGGGCCACTGAGTTTCTCCAGACCGAGTTCCTCCATTTCCATGTCCCGAATGACCATCTCCATCGGTTCTTTTGACTGCCTTCCGTCAGCTCCTCAGAGAATGAATTGAAGAGTGTGCTGCTCACCCCCACCCTCATACCTGCTTTAATCAGAGCAGGTCCTCCTGCTGACAGTTGTGCACAGTGCTTCTTGGGGAGCGAGTCGCTTCGTCGCTTAAATTATTCACACTACCTACTCATTTGGATATGTTATAGGCCTAGCAGAGAGATACAAATTAGGGTTCATTGTATGGAATCACTTGTGTGAAGCACTATGAATCTGTAGGAGCAGCACAATTCCATATCTTACAGAATATGTGGAAGGGCAGAGAACTAACAGATATACTGCCTTCATCTTGAGTTATGTTATTCGCGCCCCTGAAACCCTAAAACAGGGGTCCCCAGTAGATGGTTCATTTAGGTGAATTGGTGGCCCTCACTGTATGAATTTCCAATAACATCAATGTTGACATAAAGAAACCTACCATATCCTTATTTGAATCACTAAGTAGTTATAATGAAAGTTTTTGGGGTTTAATCCATATAccagatattttaatgattacttTTAAACCATGTAAATTAGTTTGTAAGAGAGATCTGattgaattatattatatgGTTCAGTCCTATTTGCCTCCTTTGGTTTACTTTATGATTCACTAACAGTATATTCTGattacttaatata

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU187901 True 1226 lncRNA 0.41 1 9510125 9511350

Neighbor

gene id symbol gene type direction distance location
AMCG00000289 NA coding downstream 8975 9498720 ~ 9501150 (-)
AMCG00000279 atl1 coding downstream 70789 9427499 ~ 9439336 (-)
AMCG00000276 NA coding downstream 139346 9364170 ~ 9370779 (-)
AMCG00000275 NA coding downstream 220913 9284358 ~ 9289212 (-)
AMCG00000272 frmd6,LOC102777289 coding downstream 299474 9194617 ~ 9210651 (-)
AMCG00000290 NA coding upstream 40892 9552242 ~ 9553191 (-)
AMCG00000291 cnih1,LOC107736564,LOC107683416,LOC107553211,LOC106611446 coding upstream 52045 9563395 ~ 9570360 (-)
AMCG00000284 ccdc177,LOC103144771,LOC106922444,LOC102219675,LOC102789726 coding upstream 252265 9763615 ~ 9765768 (-)
AMCG00000309 NA coding upstream 409969 9921319 ~ 9925304 (-)
AMCG00000312 plekhd1 coding upstream 431075 9942425 ~ 9955020 (-)
G149326 LOC107379822 non-coding downstream 12911 9496847 ~ 9497214 (-)
G149325 NA non-coding downstream 13540 9496233 ~ 9496585 (-)
G149324 NA non-coding downstream 13993 9494159 ~ 9496132 (-)
G149322 NA non-coding downstream 19319 9490269 ~ 9490806 (-)
G149268 pygl,LOC104938237 non-coding downstream 146690 9361332 ~ 9363435 (-)
G149338 NA non-coding upstream 23364 9534714 ~ 9534919 (-)
G149339 NA non-coding upstream 24962 9536312 ~ 9536536 (-)
G149340 NA non-coding upstream 25479 9536829 ~ 9537094 (-)
G149343 sos2,LOC106611443 non-coding upstream 31162 9542512 ~ 9542776 (-)
G149344 NA non-coding upstream 32237 9543587 ~ 9544030 (-)
G149321 NA other downstream 21516 9487879 ~ 9488609 (-)
AMCG00000270 gbg2,gng2,LOC108239039,LOC106603227,LOC107569409 other downstream 321859 9170083 ~ 9188266 (-)
AMCG00000260 gpr137c,LOC107583456,LOC107693135,LOC107723581,LOC107564956,LOC107751764,LOC106610616 other downstream 464270 9026340 ~ 9045855 (-)
G149011 NA other downstream 1403286 8095965 ~ 8106839 (-)
G148851 gpx2 other downstream 2147433 7361222 ~ 7362692 (-)
G149341 sos2 other upstream 29261 9540611 ~ 9541259 (-)
G149395 NA other upstream 245031 9756381 ~ 9766794 (-)
G149402 NA other upstream 320405 9831755 ~ 9832133 (-)
G149441 NA other upstream 419620 9930970 ~ 9935550 (-)
AMCG00000300 NA other upstream 518377 10029727 ~ 10059000 (-)

Expression


Co-expression Network