G149341 (sos2)


Basic Information

Item Value
gene id G149341
gene name sos2
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 9540611 ~ 9541259 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU187910
CTGCATACATGTGGTAGGTGAGCCTCTCAATGAGCTTGACCACAGTGCCGGCCTTGATGATGGGGATGCCGGTCTTGCTCTGGATGTTGTCCTCGAACACAATGTTCTCCTCGGAGTCCTGCACGGCGAAGCGGTACTGTTCGGGCGAGGGGAGCCGCAGGGGCTGGGCCTGCTCCTCGTGCAGCAGCACTGTGTCCAGCATGCGGTCCAGAGTGCTGCGGTACTGCAGGGTGACCAGTGCCGCCATCCAGGCGCTCTTGTCCTCGGCGCTCTTGGCATAATAGGCGGCGCAGTTCTCGTCCTTGCTCACGATGTCGAAGGCGTGGCGCAGCTCGGTCGTGTCCTCACGGTCGGCGATGCGCACCTTCCGCAGCACGAACTTCTCCTTGAGCCGGAACTCGGCCCCACTGCCCGCGCCCGGCAGCCGCGAGCTCTGCCCGTGGTTGGCCTTGCAGCTGATCATCAGCCCGTCGAACAGGAAGATGTGGCGCTCGTGCTTGGCGCCGGCGCGGCACAGCGGGCCCTCCAGGATAAACTCGCTGCAGCACTGCCCGATGTCCTTGCCCTCCCAGCCGTCGATGCTCTTCTGGATTTCGTTCATCCGCTTGATGGCCAACTGCTTGCTGCGCACCTGCCGGCTGTATAGGCG

Function

symbol description
sos2 Predicted to enable DNA binding activity; guanyl-nucleotide exchange factor activity; and protein heterodimerization activity. Acts upstream of or within pronephros development. Human ortholog(s) of this gene implicated in Noonan syndrome 9. Orthologous to human SOS2 (SOS Ras/Rho guanine nucleotide exchange factor 2).

NR:

description
PREDICTED: son of sevenless homolog 2 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU187910 True 649 TUCP 0.64 1 9540611 9541259

Neighbor

gene id symbol gene type direction distance location
AMCG00000289 NA coding downstream 39461 9498720 ~ 9501150 (-)
AMCG00000279 atl1 coding downstream 101275 9427499 ~ 9439336 (-)
AMCG00000276 NA coding downstream 169832 9364170 ~ 9370779 (-)
AMCG00000275 NA coding downstream 251399 9284358 ~ 9289212 (-)
AMCG00000272 frmd6,LOC102777289 coding downstream 329960 9194617 ~ 9210651 (-)
AMCG00000290 NA coding upstream 10983 9552242 ~ 9553191 (-)
AMCG00000291 cnih1,LOC107736564,LOC107683416,LOC107553211,LOC106611446 coding upstream 22136 9563395 ~ 9570360 (-)
AMCG00000284 ccdc177,LOC103144771,LOC106922444,LOC102219675,LOC102789726 coding upstream 222356 9763615 ~ 9765768 (-)
AMCG00000309 NA coding upstream 380060 9921319 ~ 9925304 (-)
AMCG00000312 plekhd1 coding upstream 401166 9942425 ~ 9955020 (-)
G149340 NA non-coding downstream 3517 9536829 ~ 9537094 (-)
G149339 NA non-coding downstream 4075 9536312 ~ 9536536 (-)
G149338 NA non-coding downstream 5692 9534714 ~ 9534919 (-)
G149332 NA non-coding downstream 29261 9510125 ~ 9511350 (-)
G149326 LOC107379822 non-coding downstream 43397 9496847 ~ 9497214 (-)
G149343 sos2,LOC106611443 non-coding upstream 1253 9542512 ~ 9542776 (-)
G149344 NA non-coding upstream 2328 9543587 ~ 9544030 (-)
G149346 NA non-coding upstream 3408 9544667 ~ 9544914 (-)
G149367 NA non-coding upstream 30875 9572134 ~ 9574131 (-)
G149391 NA non-coding upstream 203505 9744764 ~ 9747106 (-)
G149321 NA other downstream 52002 9487879 ~ 9488609 (-)
AMCG00000270 gbg2,gng2,LOC108239039,LOC106603227,LOC107569409 other downstream 352345 9170083 ~ 9188266 (-)
AMCG00000260 gpr137c,LOC107583456,LOC107693135,LOC107723581,LOC107564956,LOC107751764,LOC106610616 other downstream 494756 9026340 ~ 9045855 (-)
G149011 NA other downstream 1433772 8095965 ~ 8106839 (-)
G148851 gpx2 other downstream 2177919 7361222 ~ 7362692 (-)
G149395 NA other upstream 215122 9756381 ~ 9766794 (-)
G149402 NA other upstream 290496 9831755 ~ 9832133 (-)
G149441 NA other upstream 389711 9930970 ~ 9935550 (-)
AMCG00000300 NA other upstream 488468 10029727 ~ 10059000 (-)
AMCG00000334 NA other upstream 2245830 11787089 ~ 11808825 (-)

Expression


Co-expression Network