G149343 (sos2,LOC106611443)


Basic Information

Item Value
gene id G149343
gene name sos2,LOC106611443
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 9542512 ~ 9542776 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU187912
cacAAACTGGCAAATCTTTCAGGACTCTCTGGAAAGGCTCACCTGTAGAGTTCGGACTCCAGCAATGTGAGCTGGCGTGCAATCTCAATGGGGTGAAGGGTCATGAGGTCAAAGGTCTCGATCTGGCCTGCCCTGCTGATGTGCCATTCGATGGGAGGGGGCGGGATGGGGAAGGTGATGCTGTGAATGACTCCATTGGACTGGGTCTGCATCTTCCGCTTGATGATTTTACTGATGGATTCCACCCACTTCCTCATGGACTTTC

Function

symbol description
sos2 Predicted to enable DNA binding activity; guanyl-nucleotide exchange factor activity; and protein heterodimerization activity. Acts upstream of or within pronephros development. Human ortholog(s) of this gene implicated in Noonan syndrome 9. Orthologous to human SOS2 (SOS Ras/Rho guanine nucleotide exchange factor 2).

NR:

description
PREDICTED: son of sevenless homolog 2-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU187912 True 265 lncRNA 0.53 1 9542512 9542776

Neighbor

gene id symbol gene type direction distance location
AMCG00000289 NA coding downstream 41362 9498720 ~ 9501150 (-)
AMCG00000279 atl1 coding downstream 103176 9427499 ~ 9439336 (-)
AMCG00000276 NA coding downstream 171733 9364170 ~ 9370779 (-)
AMCG00000275 NA coding downstream 253300 9284358 ~ 9289212 (-)
AMCG00000272 frmd6,LOC102777289 coding downstream 331861 9194617 ~ 9210651 (-)
AMCG00000290 NA coding upstream 9466 9552242 ~ 9553191 (-)
AMCG00000291 cnih1,LOC107736564,LOC107683416,LOC107553211,LOC106611446 coding upstream 20619 9563395 ~ 9570360 (-)
AMCG00000284 ccdc177,LOC103144771,LOC106922444,LOC102219675,LOC102789726 coding upstream 220839 9763615 ~ 9765768 (-)
AMCG00000309 NA coding upstream 378543 9921319 ~ 9925304 (-)
AMCG00000312 plekhd1 coding upstream 399649 9942425 ~ 9955020 (-)
G149340 NA non-coding downstream 5418 9536829 ~ 9537094 (-)
G149339 NA non-coding downstream 5976 9536312 ~ 9536536 (-)
G149338 NA non-coding downstream 7593 9534714 ~ 9534919 (-)
G149332 NA non-coding downstream 31162 9510125 ~ 9511350 (-)
G149326 LOC107379822 non-coding downstream 45298 9496847 ~ 9497214 (-)
G149344 NA non-coding upstream 811 9543587 ~ 9544030 (-)
G149346 NA non-coding upstream 1891 9544667 ~ 9544914 (-)
G149367 NA non-coding upstream 29358 9572134 ~ 9574131 (-)
G149391 NA non-coding upstream 201988 9744764 ~ 9747106 (-)
G149414 NA non-coding upstream 351770 9894546 ~ 9897750 (-)
G149341 sos2 other downstream 1253 9540611 ~ 9541259 (-)
G149321 NA other downstream 53903 9487879 ~ 9488609 (-)
AMCG00000270 gbg2,gng2,LOC108239039,LOC106603227,LOC107569409 other downstream 354246 9170083 ~ 9188266 (-)
AMCG00000260 gpr137c,LOC107583456,LOC107693135,LOC107723581,LOC107564956,LOC107751764,LOC106610616 other downstream 496657 9026340 ~ 9045855 (-)
G149011 NA other downstream 1435673 8095965 ~ 8106839 (-)
G149395 NA other upstream 213605 9756381 ~ 9766794 (-)
G149402 NA other upstream 288979 9831755 ~ 9832133 (-)
G149441 NA other upstream 388194 9930970 ~ 9935550 (-)
AMCG00000300 NA other upstream 486951 10029727 ~ 10059000 (-)
AMCG00000334 NA other upstream 2244313 11787089 ~ 11808825 (-)

Expression


Co-expression Network