G149367


Basic Information

Item Value
gene id G149367
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 9572134 ~ 9574131 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU187947
ACTGTACAGTGGTTCAATCCAATGCCCTACTCGGTCTGTCCCAGACTCGGTGATCAGGAGAAGGCACCATGGTGAATTTCGCAAAAATCCTACGCGAGCACTGGGTCAACATCCTTGTCCCTCTTGGCTTTGTGATTGGGGTTTATATGGACCGAAGAAATGATGCCAAACTCACAGCTTTCAGAAATAAGAGCTTGTTGTACAAAAgGGAACTGAAACCAGGAGAGGAAGTAACCTGGAAGTAAATGTCTTctatcaagaaaaacaaataaatccataacaaatatttaagtcATTTTTACAGGAATATCTATCCAGTTGTGATACTGTACAGGGTTCGGTCTACATGTTTATCTGGTGACTTTGTGTGAGGTCTGTATTGGAATGACCAacatcaggaaaaataaatgtactttatccaaattaaagttattttcctttcacaGCATAAT

Function

GO:

id name namespace
GO:0046034 ATP metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:0006091 generation of precursor metabolites and energy biological_process
GO:1905039 carboxylic acid transmembrane transport biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0042775 mitochondrial ATP synthesis coupled electron transport biological_process
GO:0006122 mitochondrial electron transport, ubiquinol to cytochrome c biological_process
GO:0006412 translation biological_process
GO:0022900 electron transport chain biological_process
GO:0044237 cellular metabolic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:1903825 organic acid transmembrane transport biological_process
GO:0006518 peptide metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0006848 pyruvate transport biological_process
GO:0006850 mitochondrial pyruvate transmembrane transport biological_process
GO:1901475 pyruvate transmembrane transport biological_process
GO:0008137 NADH dehydrogenase (ubiquinone) activity molecular_function
GO:0009055 electron transfer activity molecular_function
GO:0003954 NADH dehydrogenase activity molecular_function
GO:0022857 transmembrane transporter activity molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0050136 NADH dehydrogenase (quinone) activity molecular_function
GO:0022890 inorganic cation transmembrane transporter activity molecular_function
GO:0015002 heme-copper terminal oxidase activity molecular_function
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0015075 ion transmembrane transporter activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function
GO:0016651 oxidoreductase activity, acting on NAD(P)H molecular_function
GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function
GO:0016675 oxidoreductase activity, acting on a heme group of donors molecular_function
GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor molecular_function

KEGG:

id description
ko00190 Oxidative phosphorylation
ko03010 Ribosome
ko04260 Cardiac muscle contraction
ko04723 Retrograde endocannabinoid signaling
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease
ko04932 Non-alcoholic fatty liver disease

RNA

RNA id representative length rna type GC content exon number start site end site
TU187947 True 452 lncRNA 0.39 3 9572134 9574131

Neighbor

gene id symbol gene type direction distance location
AMCG00000291 cnih1,LOC107736564,LOC107683416,LOC107553211,LOC106611446 coding downstream 1774 9563395 ~ 9570360 (-)
AMCG00000290 NA coding downstream 18943 9552242 ~ 9553191 (-)
AMCG00000289 NA coding downstream 70984 9498720 ~ 9501150 (-)
AMCG00000279 atl1 coding downstream 132798 9427499 ~ 9439336 (-)
AMCG00000276 NA coding downstream 201355 9364170 ~ 9370779 (-)
AMCG00000284 ccdc177,LOC103144771,LOC106922444,LOC102219675,LOC102789726 coding upstream 189484 9763615 ~ 9765768 (-)
AMCG00000309 NA coding upstream 347188 9921319 ~ 9925304 (-)
AMCG00000312 plekhd1 coding upstream 368294 9942425 ~ 9955020 (-)
AMCG00000308 LOC101074829,LOC107664419 coding upstream 386763 9960894 ~ 9970582 (-)
AMCG00000310 rbm25,LOC103353665 coding upstream 398856 9972987 ~ 9997466 (-)
G149346 NA non-coding downstream 27220 9544667 ~ 9544914 (-)
G149344 NA non-coding downstream 28104 9543587 ~ 9544030 (-)
G149343 sos2,LOC106611443 non-coding downstream 29358 9542512 ~ 9542776 (-)
G149340 NA non-coding downstream 35040 9536829 ~ 9537094 (-)
G149339 NA non-coding downstream 35598 9536312 ~ 9536536 (-)
G149391 NA non-coding upstream 170633 9744764 ~ 9747106 (-)
G149414 NA non-coding upstream 320415 9894546 ~ 9897750 (-)
G149438 NA non-coding upstream 345781 9919912 ~ 9921022 (-)
G149532 NA non-coding upstream 1020595 10594726 ~ 10594935 (-)
G149539 NA non-coding upstream 1138346 10712477 ~ 10712681 (-)
G149341 sos2 other downstream 30875 9540611 ~ 9541259 (-)
G149321 NA other downstream 83525 9487879 ~ 9488609 (-)
AMCG00000270 gbg2,gng2,LOC108239039,LOC106603227,LOC107569409 other downstream 383868 9170083 ~ 9188266 (-)
AMCG00000260 gpr137c,LOC107583456,LOC107693135,LOC107723581,LOC107564956,LOC107751764,LOC106610616 other downstream 526279 9026340 ~ 9045855 (-)
G149011 NA other downstream 1465295 8095965 ~ 8106839 (-)
G149395 NA other upstream 182250 9756381 ~ 9766794 (-)
G149402 NA other upstream 257624 9831755 ~ 9832133 (-)
G149441 NA other upstream 356839 9930970 ~ 9935550 (-)
AMCG00000300 NA other upstream 455596 10029727 ~ 10059000 (-)
AMCG00000334 NA other upstream 2212958 11787089 ~ 11808825 (-)

Expression


Co-expression Network