G149414


Basic Information

Item Value
gene id G149414
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 9894546 ~ 9897750 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU188016
tgtttttaaaatatttatttcaaataacagAGGTCAACaggctaaataaaaaaaatacagatcaaaAGGCATTGCTTTTGTTCCTCATATTTAATGACATGTCTATGAGACATGCATTAAATACCAGAACAAACTTGGGTTTTGCCGAGTCACATTAGCAGCAGTTACAATCTGCTACCAGCGGGTGTCACTAATCTGCTCCAAAATCTCTCacttccccctcccccttcagCTAGGTATGCAAAAGTTGTCTTGCAGTACATTTTACAGCGTAAAATCTGAAGCAATATCACAACCTATTAAGGCTTGTTTCTCACATTCCCACCCtccacacacagtactgtgctcTAACTGAATAATTGAGATGTTTAAAGTCACGGGTCTGGAACGGTTTCACTGGCCCTGCTGGTGTGTCTGATTGGGATGTTACAGCAGGAGATTGAAGGCAGTCGCAGCACCGTAGGATATCAAGAGCTACTGACGGAGACTGCAGTGAGTGAACTGCAGTCACTGCCTGCTGTGATCCTATTGTGAAAATGTTAGACATATATCTCTCTAAAACAGGAAACaactatttaaaaacatcatttaaatgctttCTCAGAAGTCTAACTCAAAACTTCACATTCTTTCCCTGGTGTACATCTCAAATGACTTTTGTAGCGCTTTTCACAATATAAACCCAAATGgctgcatgttttaaaattgtatttcaaagtaCGAAGCTTCTTTATTACTGTTGCTGTTGTCATTACGATAACTAATTAAACCCATGTGTGTTCTGTTGGTGGAGGTCTGGCACAGTTTAATTACTGTGTAATTACTCGTCTGTAAGGCAAATTGACAGATACTCACGCATCTTTGAACACTGGTGACTTCCTGTCATCTACACTTTGCTTGTGTGAGACATCTTACAACACTTATAGAGATTAAATGCAGTTCATGTCTTACACCTATTTTGAATTTAACCTGTAACCTTGGTAAGAAATATGCTTTGTTCAAACTACAGAATGGTATAAAAGCGATCTCAGCAGTGAGATTAGTGTAACAGCTTTTAATGACACGCCAAACCCCAAGCTTtcgcaataataataataaaaaatgaaaacaaaaaagcatattatacatatttacatcaTAAGCATTTTACTTTACTTCCAAGAGCCGGTGCAATGGCTTCATTGTACAAGTTAtatgccattaaaaacaaaaatacacaaccaaaatgaaaaaacaaaacaaaaaactatatagAAATCTGTCCTTGTAAGTAAGAAAGAGGACTTCTAGCCAACGggctatatttatttgcttatattTAAATACGGACATCTCTCTCTTAAACGTCCTCCACTAGAATCCAATTCTCCCCCAAAATgtcagttttttgtttgctgtgtggGTTGCATGAGAAATTAAGTTATAAGACTGtcaaatagtttgtttgtattcagaGACTAATCCGCTGGGTTTGGTCAACCACAGTCATTCTCAGAGCTCTCGATTTCTAATACGAAAAAGCTACGTTCGGAAATATCATCATCttctttccattattattaagaaaCGAGCTCAACAAGCTCAGTGTAACTGTAAAGATGATTTTGTGGTGCATTTTGCAAACAACAAAGTtgtgtggatttaaaaaaaagaaaaaattcaacaacaaaaacaaaataaaaacaaacctcaaaatgcatttcagaatatatgaccaaacctttgaaaatgtgaaatataagtcaaatataaaatcaattttccAATCCGGTCTATGCCTTGCTAAATAGGCAATGCCTAAATTGGCGCCCCCCAACCCCGTGTAATGTGCGTGCATGTATGCATTGCACTGCATAATTGCATGTTTCATCCCTCTGTGGGAAGACTAGGTTTGGTTTGCCACTATATACTATTTGTTAATGTGGAATAAAAGTGAGAATCCCCCAAGCAATTTGCCTTTGTGGTTTGATTTCAATGGCACAAAAGGGACTAGTCTGTTTATTCAGGAAACCTAAAGACTTGGAGACAACAACCTCTAATTTTCACTAATAAGTAACTTGATAGtagaatgaaaaaagtattatgGACAACGTACAGGATTgtgtgtacaaaaaaaatggtACATTATTCCAAAACCTGCCAGAATTAATAAGGTTTACAGTTACTGCTCTCATGTTGGCAAAAGACAAACTTGGAAATTCCCTCTGGAGTGCCTACCCAGGTAGCAGGTAACACTCACAGctagaaattatttaaattactcaCCATATAATTGCTAGTGAAAAACATTCTGCTTCAAACTCTTGACtttccttttcctgttttgGAAGCATATGAAAGTACAATGTATACCGCATTAGACCTTCTGTAGAAAATCAAGGAATAAAGCACTTAAAAGTTTAGTATCGtacactaattaaataattacaaaatccGGATTGCTAATCTTTGATCTACTTGCTCTGCAGGAGGTGGGATTCTGATAAGGGAAGAGAATTAGGACATATGACTGTTATGTCTCACCTGATGTGATAAACAGCTTTCTTACATTTCATGGGGCTAGACCTGGTAAATGCTTTCATGTtggatggggtggggggagggaatCACGGACACGCACTTCTTAGATTAGTGGTGTATAGAGAGTGCAAGCTATTCAGTTTCAAAGAACATTACAGAAGGctttcattgtctttttttctttctttcaactTTTTAAAGTCAtcctcaaacaaacaaaacaactaaatatcTAACATTGTGAGTAGAAAGTGCAAATATTTTGGCACCACTTCTTGCTTGAACTGGTACTGTTTTTATCTCCTTTTattcctccttctctctctctacccccccTTCACTCTCTCTGAGCGCTTACAGATGAAAGCCCGCTGTTGCCTCTGCTCCTGCTTCAGCTCCTGAGACCGTCCCTCTT

Function

GO: NA

KEGG:

id description
ko04727 GABAergic synapse
ko05033 Nicotine addiction

RNA

RNA id representative length rna type GC content exon number start site end site
TU188016 True 2935 lncRNA 0.37 2 9894546 9897750

Neighbor

gene id symbol gene type direction distance location
AMCG00000284 ccdc177,LOC103144771,LOC106922444,LOC102219675,LOC102789726 coding downstream 128778 9763615 ~ 9765768 (-)
AMCG00000291 cnih1,LOC107736564,LOC107683416,LOC107553211,LOC106611446 coding downstream 324186 9563395 ~ 9570360 (-)
AMCG00000290 NA coding downstream 341355 9552242 ~ 9553191 (-)
AMCG00000289 NA coding downstream 393396 9498720 ~ 9501150 (-)
AMCG00000279 atl1 coding downstream 455210 9427499 ~ 9439336 (-)
AMCG00000309 NA coding upstream 23569 9921319 ~ 9925304 (-)
AMCG00000312 plekhd1 coding upstream 44675 9942425 ~ 9955020 (-)
AMCG00000308 LOC101074829,LOC107664419 coding upstream 63144 9960894 ~ 9970582 (-)
AMCG00000310 rbm25,LOC103353665 coding upstream 75237 9972987 ~ 9997466 (-)
AMCG00000311 NA coding upstream 112386 10010136 ~ 10021096 (-)
G149391 NA non-coding downstream 147440 9744764 ~ 9747106 (-)
G149367 NA non-coding downstream 320415 9572134 ~ 9574131 (-)
G149346 NA non-coding downstream 349632 9544667 ~ 9544914 (-)
G149344 NA non-coding downstream 350516 9543587 ~ 9544030 (-)
G149343 sos2,LOC106611443 non-coding downstream 351770 9542512 ~ 9542776 (-)
G149438 NA non-coding upstream 22162 9919912 ~ 9921022 (-)
G149532 NA non-coding upstream 696976 10594726 ~ 10594935 (-)
G149539 NA non-coding upstream 814727 10712477 ~ 10712681 (-)
G149567 NA non-coding upstream 1235651 11133401 ~ 11134191 (-)
G149573 NA non-coding upstream 1277931 11175681 ~ 11176066 (-)
G149402 NA other downstream 62413 9831755 ~ 9832133 (-)
G149395 NA other downstream 127752 9756381 ~ 9766794 (-)
G149341 sos2 other downstream 353287 9540611 ~ 9541259 (-)
G149321 NA other downstream 405937 9487879 ~ 9488609 (-)
AMCG00000270 gbg2,gng2,LOC108239039,LOC106603227,LOC107569409 other downstream 706280 9170083 ~ 9188266 (-)
G149441 NA other upstream 33220 9930970 ~ 9935550 (-)
AMCG00000300 NA other upstream 131977 10029727 ~ 10059000 (-)
AMCG00000334 NA other upstream 1889339 11787089 ~ 11808825 (-)
AMCG00000336 NA other upstream 1942730 11840480 ~ 11847948 (-)
G149751 NA other upstream 2183793 12081543 ~ 12083214 (-)

Expression


Co-expression Network