G149665


Basic Information

Item Value
gene id G149665
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 11781203 ~ 11782635 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU188343
ACGGCGCTTGTTGTGGAGCAGGAGGCTTGACAGTGTTGATATCTCCTCTATATCGGTGCCGTCTGGAGGACATGGGCTCACTGGTCGGAGCTCTGGTTTGGAGGACTGTCCGTACGGGAAGACAATATCCATAACAGGACCGACTCGAAAGAGCCGCCGCTGTGGTATTTACCTGGGGAATATACGGGAACCAGACTGCACCCCGACTGCAGCGTGACAGGGACGTTGACACAGTGTAGTGTGTAATCCGTGTTTTTGGACTGGGGCAGATTGCTGGTCTGCATTATGCAAGATTTCGTTACTGGGTTTTAAAGAGATATTGCGTCTCAGGGTGGCATGGACCGGGTTGACAGCTGGGCATGAAACCATATCCCAGTGTTGTACAATAGGGTCTTAGTTTAAGCAACGGGTGACACAGGCTACTTTTAATGCAGGGTCGGACAATTAAACTGcagattattatttgaaaagtaattatatataaaatggtttGTGTCCTTATATAGAACATTCTCCAACCACCCTCACTAAGACTATTTGTtataagtaattattattattattattattattattattattgagagaTTTAATTGTGGGGGGGAAGCCAGCTGTTAGCATTACACTCCGTTAATTAACTAATCTGCAGACACCATTCAGTGAAAAGGAAACTGTCCTGATATTGCCTGAAATGAAACGACTACCTGTATAGGaaatgtgtaaaacaataatgacATGAACAGGGTGGCCTCGACAGTGCTATTAAATATTGACTTGATCGTCATGCGCTTTGAAAGACGGGGATTTACTGGGGGTACTGGAATAGGGTGCCAGGCTGGGGTACTGGAATAGGGTGCCAGGCTGGGGTACTGGAATAGGGTGCCAGGCTGGGGTACTGGAATAGGGTGCCAGGCTGGGGTACTGAAATAGGGTGCCAGGCTGGGGTACTGAAATAGGGGGCCAGGCCGACAGCTGGGTGTTGTGAGAGAGATCCCCCGGGGGTGCCGGACAGGCGTGCTTCAGATCTGCTGTGCCATTGATCCCGACACCGCGCACCACACGCCGCCCGCTGCAGAAGTGCTGACGACGGGGGAAATGCGCCGACGTGCCCGATTTCACCAAAATAGATCCCATGGCACCAGTTTCGCCTCTCTGGATCTATCTTTGTCTCCCAGACACACAGTGGGAGAATAGCACGGGGGAGCTCTCCCTGCAGAGCTAATCATCAATCTGGACAGATGCATATATAACTACCGAGCACTTCCACATTTTCATTGGCAATATTCTACATCTGCAGACGGGAGAAGGAAACTGTATGGATCCCTCAGCATCCTGACACTTCAATGCAAGAAATAAATCGAGCTGTCTTGGGTGCAAAAAAGACAATGACATGGAAAGCAATGCTATAGCTACCTTGACTATTTTAACGCTTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU188343 True 1433 lncRNA 0.48 1 11781203 11782635

Neighbor

gene id symbol gene type direction distance location
AMCG00000328 NA coding downstream 140 11773399 ~ 11781063 (-)
AMCG00000329 NA coding downstream 20966 11734827 ~ 11760237 (-)
AMCG00000331 tbp coding downstream 50326 11726600 ~ 11730877 (-)
AMCG00000330 atg14 coding downstream 55014 11710674 ~ 11726189 (-)
AMCG00000321 LOC105356882 coding downstream 111883 11662857 ~ 11669320 (-)
AMCG00000338 NA coding upstream 2442 11785077 ~ 11786189 (-)
AMCG00000337 NA coding upstream 32304 11814939 ~ 11829846 (-)
AMCG00000335 lrrc57,LOC106611250 coding upstream 50524 11833159 ~ 11835155 (-)
AMCG00000333 si:dkey-13p1.4,LOC106610752,LOC108436737,LOC103041189,LOC107561535 coding upstream 72281 11854916 ~ 11863616 (-)
AMCG00000354 NA coding upstream 219619 12002254 ~ 12004300 (-)
G149616 NA non-coding downstream 254111 11526870 ~ 11527092 (-)
G149603 NA non-coding downstream 343384 11437367 ~ 11437819 (-)
G149596 NA non-coding downstream 412972 11338391 ~ 11368231 (-)
G149573 NA non-coding downstream 605137 11175681 ~ 11176066 (-)
G149567 NA non-coding downstream 647012 11133401 ~ 11134191 (-)
G149722 NA non-coding upstream 203212 11985847 ~ 11986112 (-)
G149723 NA non-coding upstream 203557 11986192 ~ 11986519 (-)
G149730 NA non-coding upstream 215203 11997838 ~ 11999294 (-)
G149754 NA non-coding upstream 304961 12087596 ~ 12087970 (-)
G149755 NA non-coding upstream 307372 12090007 ~ 12090266 (-)
AMCG00000300 NA other downstream 1722203 10029727 ~ 10059000 (-)
G149441 NA other downstream 1845653 9930970 ~ 9935550 (-)
G149402 NA other downstream 1949070 9831755 ~ 9832133 (-)
G149395 NA other downstream 2014409 9756381 ~ 9766794 (-)
G149341 sos2 other downstream 2239944 9540611 ~ 9541259 (-)
AMCG00000334 NA other upstream 4454 11787089 ~ 11808825 (-)
AMCG00000336 NA other upstream 57845 11840480 ~ 11847948 (-)
G149751 NA other upstream 298908 12081543 ~ 12083214 (-)
G149847 NA other upstream 739885 12522520 ~ 12542310 (-)
G150138 NA other upstream 2041319 13823954 ~ 13826709 (-)

Expression


Co-expression Network