G149730


Basic Information

Item Value
gene id G149730
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 11997838 ~ 11999294 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU188415
TACAGCatggcttttttatttatggtgCAAATATAGAAgaatacaattattgtatttaaaattgcatagagtaaagcatttttatttcctctggACTGTATATTTAGTTATATCGTATTACACTTTGTGATGCGGGGGTGAGGTTCAGAAGGATGGTCAGCCTACAGCAAATATctgcatataaaaaaacaaaacggaaaTTAAAAAACGGCAACAGAAGTATTTCAGTAAAACACAAAGTACAATGTGCGGAGGTTTGCGCTGTGGCCCTCGGGGGCCTGGGACAGTGGGAACAGGCCGGCTGTGTGAGCGTTTCACTCGCTGTACTGCAGGCCGCCCGAGTCAGGGAAGCTCACCGGAGAAATAAAGAAGTGGGCTAATGATACTGGGGCCCCTGTAAACACGACACAGCCCTAACACAGGCAAGAAACACGGGAACGTCTGAAGATGAGCCTATTTCATTTATGTCTAGTGAAGCCACAGAGTTACAGTGTAATCCCTGTTCAGTATGCTTGACTTAAATAGAGCATGCACCCCCACAAACTAGAACGGTCTGAGGTTCAAGGTGAAAAACAGCAGATAAACATTGAAAGGGGCTTATTTCAAATGAGTTAGGTGACTCATATTGAATGCCAAACCACAATCAGATCTACGTAGCTCTCACGTGCACTAAGGGGATTTTGATTACTGTGCCATCTTTTACAGGAGCCCAGATTGAAGAATGCAATGGTACTGTATTTATGGAACACTGAATTATCTTTGATTAAacttaatcaattaatttctGGACCTTAACCTCTTCACATGAAGTTGTGTATTTTGGACTTCAGCCCACCCTTATTATCAAAGCTTCGTATATGCCCTGCCACAGAGTCTTTACATTTATTCTTctccataaaaaatacaaattgcaatttGATCCACACATTAGAGGCAGTGTGAGGTTAAACACCCTGTGCTGGAGATTCCAGTGAATAAGACTACAGTTCTCTATCTCAGCCGTTATAAAGTCCTTCCAGAGGATTCAAACGTTTTCAATCTTAGTCCCCGACACTTCAACTTGAAGTTTCTTTATTTTCGAAAGaatcaaacaacaaaatgagtactcaaatgtttttctgttctctAGCACAGAGTAGTGTTTCTTCTGTGAACAATCGTAATACGACAAACTTAAAATGATCCCGGTTAGTCAGACTGGCAGGCTGACAATCCTATACAGCAATCAAATACTACTGTATATTTCAATTGTAAACGCTGCCCCCTTCTGACTACCAAAGCTCAATACACctcaacatttttgaaaaaaatatattttatattaaaaatatatttaaatgtatagctacaagtaaatacagttcagttcatGGGATAACACTGAAGGAGGTCAGATTAATAGTTTTCTTCAATCTATCAAATGTAAAATTCACAGCTaggtttgtgttattttaaag

Function

GO: NA

KEGG:

id description
ko04727 GABAergic synapse
ko05033 Nicotine addiction

RNA

RNA id representative length rna type GC content exon number start site end site
TU188415 True 1457 lncRNA 0.39 1 11997838 11999294

Neighbor

gene id symbol gene type direction distance location
AMCG00000333 si:dkey-13p1.4,LOC106610752,LOC108436737,LOC103041189,LOC107561535 coding downstream 134222 11854916 ~ 11863616 (-)
AMCG00000335 lrrc57,LOC106611250 coding downstream 162683 11833159 ~ 11835155 (-)
AMCG00000337 NA coding downstream 167992 11814939 ~ 11829846 (-)
AMCG00000338 NA coding downstream 211649 11785077 ~ 11786189 (-)
AMCG00000328 NA coding downstream 216775 11773399 ~ 11781063 (-)
AMCG00000354 NA coding upstream 2960 12002254 ~ 12004300 (-)
AMCG00000355 NA coding upstream 5812 12005106 ~ 12019181 (-)
AMCG00000356 NA coding upstream 25300 12024594 ~ 12025496 (-)
AMCG00000342 NA coding upstream 144229 12143523 ~ 12144650 (-)
AMCG00000341 NA coding upstream 160172 12159466 ~ 12161567 (-)
G149723 NA non-coding downstream 11319 11986192 ~ 11986519 (-)
G149722 NA non-coding downstream 11726 11985847 ~ 11986112 (-)
G149665 NA non-coding downstream 215203 11781203 ~ 11782635 (-)
G149616 NA non-coding downstream 470746 11526870 ~ 11527092 (-)
G149603 NA non-coding downstream 560019 11437367 ~ 11437819 (-)
G149754 NA non-coding upstream 88302 12087596 ~ 12087970 (-)
G149755 NA non-coding upstream 90713 12090007 ~ 12090266 (-)
G149756 NA non-coding upstream 91353 12090647 ~ 12098491 (-)
G149763 NA non-coding upstream 158455 12157749 ~ 12158471 (-)
G149801 NA non-coding upstream 304706 12304000 ~ 12304343 (-)
AMCG00000336 NA other downstream 149890 11840480 ~ 11847948 (-)
AMCG00000334 NA other downstream 189013 11787089 ~ 11808825 (-)
AMCG00000300 NA other downstream 1938838 10029727 ~ 10059000 (-)
G149441 NA other downstream 2062288 9930970 ~ 9935550 (-)
G149402 NA other downstream 2165705 9831755 ~ 9832133 (-)
G149751 NA other upstream 82249 12081543 ~ 12083214 (-)
G149847 NA other upstream 523226 12522520 ~ 12542310 (-)
G150138 NA other upstream 1824660 13823954 ~ 13826709 (-)
AMCG00000409 exoc5 other upstream 2003782 14003076 ~ 14028927 (-)
AMCG00000425 entpd5,LOC107586906,LOC105908609,LOC106571572,LOC106608092 other upstream 2246523 14245817 ~ 14261332 (-)

Expression


Co-expression Network