G149756


Basic Information

Item Value
gene id G149756
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 12090647 ~ 12098491 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU188450
TTTAatagcaaattattttattgaccgAGAACAGGCTCTCTTGTTCACAAATATTCCTTCTCTAATGGCTAAACAGACAAATGCGTCTTGGGCTCTCTGGCAAGAGGTCAGATTCAAGGTCACATAGCTGCTGACTGGAAGCTTTTgtaaggagaaaaacaaaaaacagcagaaacaggATTCAAGTTCaatcaaaacatatatatttttttccttctaaaatcaatacacttccattttcacctttaaaatgtactttttttatgtgttacatttgcagatttattttgtatgcccccaaaagaaaaaaaaaaaaaaaagaatattctGGAATGTCTCTCATTCCACTTGTAAACACTCAGACCTGGCCACGGGGGGAAAGGGCATTTGATAAGGGGGCTGAAAAGAAAGTGCATATACAAGAAATCACTGTTAAAAAGATATAAAAATCAGTCAAGAAAGAAAACGGGTTATCGGATGAACCTGCACATCACcaacaagtttttgttttaatacacgTATATAATTTAACACCTGCATTTGCATGTTCTCTACGATTACTTATCAATTAATGACTACATTCCCTACTCATAGCCCATCAATGCTGAAAATGattgttaatatattatgtaaaaacagcttaaaaTCGTTACACATTTAGGTCTTTGGGACACTTATGTTTAGGGGAAAGTATGATAAGCACAGatcatagaaaaacaaaacaaacaaacaaataaaaaagaaataagaaaggCCCTTGCATCAATCATTCTGAAGGGCTTTTGGAGCCGTCCCTCTCTTCCACAATTACACAACTGAAAGCCAAAACCCACCAAATATGATGCTTTTCTGCAGCCCTCCCAGACAAGGGAAATTTAAGTGTGCCACTCTGAGGGGCAAGCAAGTGTAAAACggtcaataataaaatactgcaaggatccctgtaaataaataaataatcaaatcaaatcaaatcaaaatacgAAAAAATGATTGTCGAGGCGGTTAAGAGTCAAACTGTTCAAAGATCTCACCTATGCAAAGTTTGCCATTGTTTAAACAGATGGTCTGGAGGTATGTAACCAGGTTTTGTTGGGGGGGATTAATAAGGGTTAATTAGTAGGGCTGCAGCAGGCTTTAAGGGAAACGATTGTGTGTAATTGTCTTAGCAGAGAGTCCCAGAACACCGAATTCGTTAACAACGTGTAATAACTGGTCACGGTTTATACAGTCTCTTCAGAAAGACAACTGACCTGGACCACTGGACATGTAATACACATGCACGATTGAGGGAGGGTTGCTTTAAGCAGATAAGTCTTTACATACTTTCTTCTTTTAAAGAAAGTTATGTTAGTAAGTGTCCCCTACAGAAATGTACCCCACAAGTTGTTCAACATAAGCAAGATAACAATATCACAAAGTTGGTTTACAGTTTTTATAAACCATTCACCTCTCTCAAATTTAAATAGTTACGAAAAAGCAGATAGACACTCTGCTGCAGGACTCGGCGGCTGTCGTTACATGGATCCCACATGACACCCTGTGGCAACTCAGTATAAATGCAGTTACTTTTTCTGCGAACACTACAAACATCTCACTGAGCTTAAAACCTCAAGAAAACCTGACTGTGGTTTTTGTTCTGTGTGCTTGTGCCCGTGTTCTGCACGAGTCCCAGAATGTCTGGGAAGATTTGCAACTGTGTTTAAGGCAAGGCAGACGTGTAATTACAGAGGAAGTCTGAATGAACACCCTGTTTTCTTCAGTATGTGACACACTGCTCTGTGGTGTGGTGCTGAATGGGGCTTGAATTAGGCACTTTTTGCAATGCAGTACACagtttgcctgtttgttttcagtctttaGGTAATACCCACTGATTTCTGTGACTCGTCACAAGAAATTCACTTCTGGAAAGAATGGTGGATTGAGAGCAAACATTCAAacctgagaaaaaaaatggaaataaaaaaaaagtctgaactATGAGCTAGACAGGCCCTATTTCATTTAGTTCAGCACTGTGCTCTGCTACCACATGCACCACAACAGGTCTACGTCCTGGAGAACCAGGCAGAGaagggagggaaaaaagcaaactaaaagcaaaaaacaaaaaaacaaaaaatgtagtcAGCATGCATCACGTTTCATTCATGTAAGAGATGGAACAAAGCTTTAACTGACCAATgtcaaaaaagagaaaagaaacggGAACTTGGGAGCATTGAAAACATCTTAAAAAGTCAGCAATCTACCAAGCAATTCATACTCTTTAAAGACAAGTACCCTTGTTAAGGCAGTGGCAGATAAAGGCCAAAATTCAAGGCCTGTCAGGGGATCCACAGACAGAGTGCTAGATCTCTCCTGCTGGGGTCCTGTTCTCTTTAGTGTATATTCATTGCTTTAGCAGCTCGAACTGACTGCATGGTTCGTGCCTCACAGGGTGGGCTTATGGACGGCCTGCGCAGGAGTCGGCCTGTTGTGCCATGAACACTGATGTTCACGATGCCGTGTTGTGCACTCGGATTCAATGCTCAGCAGAACTCAGCCAGGATATTAAGCCAACATACAGAAGTATGGATCGGAGGGGCCACACTGCAGTAAAACCCTGCAGCAGCGGGTACAGCACACCCCCGGCAGCATGACCTGCCATCGTTAGTCGTGCGAGCCATACACCTGGTCTGCTGAAGCACTAGGATCGCTAGGACACTTTGAGATGTGAAGAACTGTATTCGAGGGCAAGGTAATTTGATTTTCCATACACTCACTACGGAGTTTCACTGAAAAGTGTCCTACATGGCAATGGtggatttgaaaatgaaaaaaaaaaaacacctcttcAACTACATTCTTcggtaacatttaaaaaaaggcagcCTTCAATAGTGTATGCATTTCCCTTAGCGCATACAACTTCATAGCCCTGTTATGAGGAACAGTTAGGTTTTTCCCTTCTCTGTGCAGTGACTACATATGCCTGAATTGAAAGTGGATACAAATGGACGTCAATGCCGTAGAATCAAAAGGTTTCTTGTGAAGgcctttattattttgtcctgtttaacatgtaattaaatcatgaaaaaagAGTTACTATAATTTTTCCCAACCTTTTGATCCACAGCAAATACACTGCCCTACGGATTAATACTTTTCCAGCGAGCAGTGAGAGAGGCGAGGTGAGGACACGGGGCTGCAGGACTGGAAGGGGCATGTCAGGTCAGTGTACCGAGTACTGGGAAGGGACTGCAAAAGGATGaggttaaaatgtttatttcacatttcatgtaACCTACTTTAACACGGTAAATTGTATGGctaaataactatttaattcTCTCAAATTTTAAATACACTGACTTTACACAGAACTTTCTTGAGTAACATAAAATAGCCTACGATCTGTGAATACGTTCAAGTCTTCATAGTGCAAGTCTGCATGTTGGATTGTGTTTGGAATGACCTGCGAGAGCAACATCGGATAGAAAAACTAGTTTAAACTCTTTCGGACACAATCGGGGAAAAGCAAGATGTGTacgttttaaaaacatgatttgagTTGATGGATTTATTATGGACAGCATGCAGCAGTTTAAATCAAACTGAGCTTCTAATTACATTGTGGATGAAGCACTTAAAATCCccatttcttaaaatacaaacctatagattaaaaaataaaaaaagaacaggcactcaaatgaaataatgaaaactgCAACCTTgtttcacagaagaaaaaacccttcagttttataaataagCTCCTGAAAGGTAAATCAGCAGGGATGCTAGctgtcagcattttttttttctttttttttttgtccgcTAAATCCCAGATAGCATGacaaagcatttaaatataacacatttacaaatatactcTATATACTCCAAAATAACTGGTTTCCATTTTTTCCTCatgattaaattacaaaatatatatgcaggCATTTACACCAGCCATGACCAAGGGCAAACAGATTTATATTTCTCCACTGGTAAGATCAGATCTAGTTATATTTCTTGGGAGGGGGTTCATGTTCACGTTTTATTCACCTACCAGTCTCTCAAATCAAGAAGAATACAAACCTTTTAATTCATATAAAAGACAAATGTGTGCATCATAATGTAGAAGAGTGCGTTATCGGGGGGGCTGTCCACAAGTCTGGGGAATGAAACGCATTAGAAATGTGGgttgtttttctccctccccAAGACAAACAATCTGATAGCAGTGCCCAAGTGTATCTTTACAccaaagaaatacaagaaacaaaaccgAAAACACTGGCTTAAGATCTTTGAGAAAGTGCTTTGTTGATACATGATTTGTAATGCCGAAAGCAATTTCTAATGACATGGCTGACATGCTAAATCCATGCTTTACATAGTAAGGAATATCATCAACTGTAGATGTAAAGctaattttaacattaaatgtttatactaacagttattatttttaaatggttgtgGGTAATTAATACTATCCAAGAAAATTACTACTAAAGAACGTTTTTCAGATGACATAAATGACAGTATAGAATGGGCTTCATTTTCAGCCTGTACTATTGTGCGTCTGAAAaagaccaaataaatacatgtttaattgtaaattacacactgcaggaaacaaaattacttttcatgacCATGAAATTCTCTCATCAGGACTTACTGCAGATAAGTTTAATTGAAactcatatattatttattccatttgtaggatgtttttataatacacaggtctgtcttttaaataatgcaaacatgCTATGCTGTGATTTTGATTTGGTTGGAAAATGCCCAGTTTTGCCActcagattttaaatatttacatttaaatcagggGACTGGGAGCTAAAAAGCATCTAAGATTATTCAGTACCCTGGGTTAAagatttcatttccttttttttgatggtttgttttgtttttgttttgttttgtctgtccaGGGCCTTGTCTGTATTGTCAAGACTAGATTACAGCCTACATTGTTCTTTATAAAATGCCAAaagatatttttgtatatcaacttcaaataaaatctttataaTGGTAATTCATTGATCTTTCAGAAATTTACATTTGGTCTGGTAAGTCTGCTGCACTTAACAGCAAAACATGATTGAACTACATGGTTCATAGGACAGGAATCAGAAGTAAAGCAcacttataaaaaaataatttaaaaaaagcgaTTATTGACATTAATGTGTGTAGTTCcccacacaataaaacattattcaaattGGTTTCAATCTCCTCAATCTCCTCATTCCCCAACCCAAGAAAAAATCCCAGTATAAAGGCTCCAATATAAAAACGTAACGGTTTGGTATTAACTTAATTCCTAGCATCCCTGGTGGTCTGCATTTGGAGGCTGTCACACATCCGTTTGTATGCAAGTACAAAGAACACATGGATTTCTTGTATTCCAGTGACTCTACACATGCAGTCCTGGAATAAACTCTGCTGTACAGGACATCTGAAGAACACTGTATTCCCGGCCAAATCAGCAGAGCTCCAATCACAACCCACACTCGTCTTACGATTACCTATTATCAGAGATGACTAGAAGTCTGTTTCCATGGGTTTGATATCCGAAGGCtatatatgaaaaagaaaaagaaaaaaaccaaAAGTGAAACATTTGGTTGCAGATAGAAAGAATAAaccactgttttgtttctttccaagTCTATCAGTGTCACTCAGTTTGAAAACGGGATTTCATTCTTGCTTTTGAAAGTAGAGCTACGTCACTGTCTACTTAAGTGTTGCTTCACAAACACCTTGCTACAGCATTGCGTGCACAAATGTAGTCCAAGTGTAACTCACTCACAAAAAAGGTGTAGAAGAGAAGCTCATATCTGTGAAATTCagtttaagaaaaagaaagtgtggTAATTTTTTAACTTCCTCTCATGAAGAATATTGTACGCAGATGGCTACCAGACCCTAGTAAAAGACATAGTAATTCTGGTagagaagcattttaaaatcactgcTTACCTACAATCCAAAAGCAACCAGTTTCTGATTCATAGTAGAAATTCAAAATAAGGGTGGGGATAATAAAAAGCTCCAGGATTTAAAACAGGCTGCTGCCCACACAAAActgagaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtttacagGAGGAGAATCATTCCCTGATCCCATAGGGAGGTGGGGAGAGCCTATTTTTCCGtctacacatatacaaacataaatatgcaGAATTTCTCCCGGATAATATTAGTAGCGGGGAAAGCCAAGAACACAATCATAAAACTTCTAATATAACATAAAATCAATTAGTGCAAACAAACAATGGACACGAGCGGGGGTGGGCGGGCTGGCGGGGTTTGGGGGGATAGGGGCTCCACTCGGTGACATCCTTTGGTTTCATcggggggtggggaggtggggaggtGGGGAAGGTTTGCTGCCTACATCTCTACCTGCAAGGCGTAAGGCAAGTTATGGGTTATCGGTGGGGAAGcattgaaacaaacaacaccTCCCTCTCATTGGTCAATTCACAAGCAGGGAGCCAAACCGCTCCTGTGGGGAAGCCCCAATGGACCCTGGGATAGCTGGCCCTCCCATAGTGAGTTCTGGtcagaaactgcatttctaccccccccccttttcaaaaaatcaaaacaataaacaagcaaacaaacaaacaaacaaaaaacagtactGTCAGGAGATGGATTCAGTGTTGACCATCATGTGGATTAAACCAAAACTGTCCAGTCAAGACCTGTGCAGCAAGCCCAGGGTCATGGTCTTCATCGTTTCAATATGAAAGTTCTCCAACTTTCAAAGTCTTACTGAgcgcaaataaataaattaacttacCCTACCGCAGAGGACATGGGTATatacttaaaaattaaaaagaaaaccataatCTTTGTCTCCGATTTAACGTATGCCATTAAACATTGTTGTCACACTTCTTGTTAGACATCACACTTATTGCACCTTCAAGTCATATCCTGGAATTGGTATTAATCGCAGGTATACAATACACGCTTCAGACACAACAGATAAAAATcctaaacaaactaaaaattaTACGActtcaaatcattttcaaaacataatattcatgtggttttttttttttttttttttttttcttttagtttttgtcaTTGATATGTTGCATTTTCCCACATACTATTATCCAATAACTTTTGGGTTAttggagggggcgggggggcaggtcCTGGTATGGTTGACCTGTAATTTCTACCAGTGTGAAAAGAGTGAAGTTCCCAGTGACTCTCCTGAAAGTGCCATGAGGTGGACACTCCTGTCCCAAAAAACACCCCCTTCTTTGCGTCTCCATCTCTAACCAGTAACTCCCCCAGGGTAAGGCGGGCTCCCACAGGTACGGTTTGGCACTTGTCTGCTGGcctatttcattttcagttcagGTACATCAATTGGTTTTGTCTGCTAAGTTCCTCTCTGTGTATCTCAGTGTCCGAGTCCCTCAGTGCAACAGCGGGGGCAGGCGGGCGGGcggggtggaggtgggggggggttggggggtttgCAGGCGGTGCCGGCAGGCTGGCACTCCTCGTCGCGGGGCAGCGCTACTGCAGGTTCTTGAGGATGCGCCCATAGCGGAAATCGTAGACGTGGCGACAGAGGAACACCAGGTCCGGGTCGATGCTCATGGGGACTCGGCGGTGGGCCGGGATGGCATACTCTGGGGAGGGCGGCACCACGGGCATACTTTCAGGGAGACCCTCCCCGCGTCGCTTCACCAAGGCACAAAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU188450 True 7845 lncRNA 0.40 1 12090647 12098491

Neighbor

gene id symbol gene type direction distance location
AMCG00000356 NA coding downstream 65151 12024594 ~ 12025496 (-)
AMCG00000355 NA coding downstream 71466 12005106 ~ 12019181 (-)
AMCG00000354 NA coding downstream 86347 12002254 ~ 12004300 (-)
AMCG00000333 si:dkey-13p1.4,LOC106610752,LOC108436737,LOC103041189,LOC107561535 coding downstream 227031 11854916 ~ 11863616 (-)
AMCG00000335 lrrc57,LOC106611250 coding downstream 255492 11833159 ~ 11835155 (-)
AMCG00000342 NA coding upstream 45032 12143523 ~ 12144650 (-)
AMCG00000341 NA coding upstream 60975 12159466 ~ 12161567 (-)
AMCG00000343 NA coding upstream 75144 12173635 ~ 12181462 (-)
AMCG00000348 degs2,LOC107697737,LOC107733197 coding upstream 267974 12366465 ~ 12379163 (-)
AMCG00000360 slc25a29,LOC101165114 coding upstream 306113 12404604 ~ 12414806 (-)
G149755 NA non-coding downstream 381 12090007 ~ 12090266 (-)
G149754 NA non-coding downstream 2677 12087596 ~ 12087970 (-)
G149730 NA non-coding downstream 91353 11997838 ~ 11999294 (-)
G149723 NA non-coding downstream 104128 11986192 ~ 11986519 (-)
G149722 NA non-coding downstream 104535 11985847 ~ 11986112 (-)
G149763 NA non-coding upstream 59258 12157749 ~ 12158471 (-)
G149801 NA non-coding upstream 205509 12304000 ~ 12304343 (-)
G149802 NA non-coding upstream 246918 12345409 ~ 12345710 (-)
G149942 dync1h1,LOC107568493 non-coding upstream 719289 12817780 ~ 12825281 (-)
G149994 NA non-coding upstream 844095 12942586 ~ 12946121 (-)
G149751 NA other downstream 7433 12081543 ~ 12083214 (-)
AMCG00000336 NA other downstream 242699 11840480 ~ 11847948 (-)
AMCG00000334 NA other downstream 281822 11787089 ~ 11808825 (-)
AMCG00000300 NA other downstream 2031647 10029727 ~ 10059000 (-)
G149441 NA other downstream 2155097 9930970 ~ 9935550 (-)
G149847 NA other upstream 424029 12522520 ~ 12542310 (-)
G150138 NA other upstream 1725463 13823954 ~ 13826709 (-)
AMCG00000409 exoc5 other upstream 1904585 14003076 ~ 14028927 (-)
AMCG00000425 entpd5,LOC107586906,LOC105908609,LOC106571572,LOC106608092 other upstream 2147326 14245817 ~ 14261332 (-)
AMCG00000436 NA other upstream 2471471 14569962 ~ 14572432 (-)

Expression


Co-expression Network