G149942 (dync1h1,LOC107568493)


Basic Information

Item Value
gene id G149942
gene name dync1h1,LOC107568493
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 12817780 ~ 12825281 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU188697
CACTAGTCTTGGAATGCCAGTTATCAGTCTAGGTAGGGTGGCCGAATACCAGCGATAACCAAGGTCTTTGAAAGCAGCtgcaaatattttttgcagatccattttcttccatttagtTTAAACATCTGGGTAACAagtttaaaatggtttcagcTATTCAGGTCTGATGGTTGTTGCTAGGTTGAGCAACCACCTGCAGAAGTGTTAATGAGTTGAGCAAAAGGGTAGTGTGAGAAAAGTGTCAgtctaggtgtgtgtgtgtgttcgcgTTCTTAGTCCATTAGGActgaccttaaaaaaaaaaaaaaaagtccacttTGCATTAGTTAGGAGTGACACCACAGAATGGAGACATTTTATTATGGGTGGGTAACAATACCAGTACtaaacatttccttttcctttcacaaacatacaaattcCTTCTTTAAAAGCACCCTCGCCATTTGACTCTTAATCCTTCCATCACATACCATCTGCCAACAACATTCCTCAGCCTCTCTAAACCTCTTTCACAATGATTAACATTTTTCTCTATATGGTAATAATGCATCTAAACACtaatctattatttttttatttgttgctttTATGATCCGTTTCTTCTTTAGATAGCGGTTCAGCGTATTCGCTGCCATGCGGTTTACTCGGTGCAGAGCACGGCCACTCCGCGCTCGTAGAAGATGTGGGGGTCCTCCTTGGTGTCGAAGTCCACCGTGAAGATCAGGTCGGCGCGCGTGAAGTTCAGGCCGTTCCTTCCCCTGTGGCTCCCCTACCTGGTTGAGAGCCTCCATGGTGAAGTAGATGCTGCTGCAGGCGGTTGAGAGAGACAGGTACTGCTGGGACACCGACTCCACCTCCTGCATAACGATGTCCGTCTCCTCCACCTTGCGTGTCACCTCCGCCGCTTCCTTCTTCAGGTTCTCCAGCGTGGTGATGATGGTGTCATCGTCCAGGATGCGACCTTTCACCTCGTTCAAGGCCTGCAGCAGGGATTTCTCAAGCTGCCGGAGACGGAGCTGGAACTCGC

Function

symbol description
dync1h1 Predicted to enable ATP binding activity and minus-end-directed microtubule motor activity. Acts upstream of or within with a positive effect on regulation of cell activation and regulation of microtubule cytoskeleton organization. Acts upstream of or within camera-type eye photoreceptor cell differentiation and central nervous system myelination. Predicted to be located in cytoplasm and microtubule. Predicted to be part of dynein complex. Is expressed in eye photoreceptor cell; photoreceptor outer segment layer; and retinal photoreceptor layer. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease axonal type 2O; autosomal dominant non-syndromic intellectual disability 13; and spinal muscular atrophy with lower extremity predominance 1. Orthologous to human DYNC1H1 (dynein cytoplasmic 1 heavy chain 1).

NR:

description
cytoplasmic dynein 1 heavy chain 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU188697 True 1030 lncRNA 0.46 2 12817780 12825281

Neighbor

gene id symbol gene type direction distance location
AMCG00000363 NA coding downstream 263041 12549230 ~ 12554739 (-)
AMCG00000364 NA coding downstream 300581 12489183 ~ 12517199 (-)
AMCG00000362 NA coding downstream 346287 12460630 ~ 12471493 (-)
AMCG00000361 wars,LOC107088075,LOC103399041 coding downstream 389488 12423003 ~ 12428292 (-)
AMCG00000360 slc25a29,LOC101165114 coding downstream 402974 12404604 ~ 12414806 (-)
AMCG00000378 NA coding upstream 1312 12826593 ~ 12830150 (-)
AMCG00000379 LOC108411468,LOC106916349,LOC103155534,LOC102218377,LOC107100299,LOC103457917,LOC108257813,LOC107378076 coding upstream 7919 12833200 ~ 12847221 (-)
AMCG00000374 NA coding upstream 60463 12885744 ~ 12896450 (-)
AMCG00000373 NA coding upstream 86891 12912172 ~ 12919957 (-)
AMCG00000372 pole2 coding upstream 96102 12921383 ~ 12932189 (-)
G149802 NA non-coding downstream 472070 12345409 ~ 12345710 (-)
G149801 NA non-coding downstream 513437 12304000 ~ 12304343 (-)
G149763 NA non-coding downstream 659309 12157749 ~ 12158471 (-)
G149756 NA non-coding downstream 719289 12090647 ~ 12098491 (-)
G149755 NA non-coding downstream 727514 12090007 ~ 12090266 (-)
G149994 NA non-coding upstream 117305 12942586 ~ 12946121 (-)
G149995 NA non-coding upstream 122035 12947316 ~ 12949350 (-)
G149996 NA non-coding upstream 124644 12949925 ~ 12950128 (-)
G150007 NA non-coding upstream 141679 12966960 ~ 12968715 (-)
G150072 NA non-coding upstream 774553 13599834 ~ 13682131 (-)
G149847 NA other downstream 275470 12522520 ~ 12542310 (-)
G149751 NA other downstream 734566 12081543 ~ 12083214 (-)
AMCG00000336 NA other downstream 969832 11840480 ~ 11847948 (-)
AMCG00000334 NA other downstream 1008955 11787089 ~ 11808825 (-)
AMCG00000300 NA other downstream 2758780 10029727 ~ 10059000 (-)
G150138 NA other upstream 998673 13823954 ~ 13826709 (-)
AMCG00000409 exoc5 other upstream 1177795 14003076 ~ 14028927 (-)
AMCG00000425 entpd5,LOC107586906,LOC105908609,LOC106571572,LOC106608092 other upstream 1420536 14245817 ~ 14261332 (-)
AMCG00000436 NA other upstream 1744681 14569962 ~ 14572432 (-)
AMCG00000457 NA other upstream 2298744 15124025 ~ 15137923 (-)

Expression


Co-expression Network