G149994


Basic Information

Item Value
gene id G149994
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 12942586 ~ 12946121 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU188768
CGACGGGTATGAGTCATTGGGTGTACTAGGATAAAAAGATTTGATTTCAAAGTTGTCATTTTCTTCCAGCTATTTAGCATACATTATCAACTTAAATGAGAAGGCCTAGgacacaaaaaaagcatttccaaCAGATACCTTGCAATCACATAAAATCACTTTACAAGCTGTTACATGTCATTTTGAAACAACCAATTACCAGCTGAAAAGTGCTAGTACTGCTGACCTTTTTTTGTAAGGCGAGAGACAATACAGTGCTTTCAGATCTCACATATTTTGATACCTTTCAAAATGCTACGGTTTACTgttgcatttttcaaaacatgacTGACAGATGCTCAATAGAAACAACATTGATTTTTCCAGACAGCAATGCTCAAGCCTGCATATCATatcaattcaaaaataattcTATGGCCAGGGAAGGGAATGGGTCTGTAACTGGATTGTCTACTTTGGGTGAAAATGTACATGTTCAGAATGAGTAATAAATATATCAGTAATGTACATGTTTTACACAGGGATGCATTTCCCATGTATATATGGTGGAGGGATTagtttgcactttgttttgttctttttaccCTAACTCCCCTCTACATCTGTATGTCTTGAGGTAAGTGCCACTTTaatgctgccccccccccctctgcacATAAACTGGAGAACTAAGGACCAGTTTGCAGTCTCTGAATCTTGTCCCACTTCTATACTTTTGCTCATCCAGGCAATGAAATCAGGATGACACAGGTGTTTTATTCGATGGCAGCTGCTTTCTTTCATGCAAGCTTGCACAGTATAAATTGACAGTAGACGTTAAAGGGAAAAACACTGTTTTCATGTAGCTTGTTGTAATGCATCTAATTTGGACAATCTGTGATtacactgtatatttaattgcatgttcAATCTCTTCACAATTAATTACCACTCTACAGCTCATTAACCTAAGACACTGGCTCAAGTAACTCAATTATGTGGCCAGTGTCAGGTAGGCCTCGTTAACAAATAATTATCTGTAATTGTTCTTATTGCAACTTTATACTCTGGATGTGATTGTGGCATTACTGGTCTAGCTGGCCATGCTTTTACATCTACTGACAGAGGGAAAAGGCGCATTATATTGCACTCAATGGAAACCAGGACATTGCAAACTGAGTTTCACAATGGCAAACTTCCATTATGATGTACCTCGCCTTGGCCATGCACATCACAGTCTGCGGTCACCTCGTCCCTCTCCGAAGTGAATGGCGGGACATCGCAGTTGTGGTTTGGGGGTTCAGACACATCTGGACTCTCATCAATCGCCGACTCTGTCAATTCAGAAACCAGCTTCAAGCCTTCGGATACAGTGACACATGCTTTATTTTGGACCTGTAATGAAGGGTGGTTTGTTACAGCTCCAGGGGCATCTGGGATACTGCTTTCCTGCCATGTTGGAAGTTGAGAGGTGGCGGTTTCGTGTTCACTGCCGTCTCCAGTTGGGGCTTCGCTCACCACCTGCTGCGGGCCGCCGGCTCCGGCTGTCGGGTCCTGCTTCAGCGGCAACACGGGCAAAGTGACAACCAGCTGTCTGGTGCCTTTAATGAATCTGGCATGGCCTTGCTGTTCGTCCACGGGGTAAGGTAAAGTCACGTCCAGCCTGTACGCCGGTTTCTGGGATTGTAAGAGCAGCCGGTTCTCGGTCACATCCAGGCCCGTTTCCCCCGCGGAGCTGAGCAGAGGCAGGTCCACGGTGATGACGATCTCCCGGGGTCGGGGACTGGGGGCAGAATCGCGGGAACACCTGTAATCTTGCAAGTCAATGTACGACCTGAACTTCATCTTATAATTTGGTTCCGTAGGTGGACCGGGTTCTGCTGGGTCTGGGGTGACTTTCTCCGTTTTACCGTCCACGTATTTTGATGgcactgtgtgtttctgtgtgttgttgttgttgttgttgttgttgttataggGGTACGGGAACCGCAGAGGGTCATTCGGGTCAGCCGGTTCCTTTTCGGTCACTGTGTCCGCTAGTGGTTTGCGAAGCACTGCGGGATGGGGGACCCCCTTGTACTTCATTTTCAACACCTTGACGTTTCTCTCATCTAGTTGGACATTGTAGTGTTCCTCAATGGCGTCCATCGCCGTCTTGTCAATCATTTTCATAAACCTGTCGTTTTTCCCGGCCATGTGAAGCGTGTCGGGGTGGAACACGACGTCGTATATCCAGTGCTTGTTACCCTTGGGGTCCATTTCTTGCCTCCCCGGGGTCAAGCTGTACGGCAGGGTCCAATGCATCCCCTCTGCCGCATCACTCTTCCTGCACCCCGGCTTGTGGATGAGGTGGTTGGTGCAGATGTTGATGAAGCACTTCTGCCCGCCGCCCACGCTGGTCTTCAGGGCTCTGGCCGGCGCGGGGTGGATGAATCGGACGTCCATGCCCCTCTCCTGCTCCATCTGCGCGATTTCCTCCTCGTACTTCTTCTTGTTCTCCGGGTTGGAGATCTCGTCGGCATATTCCCACAGCATCTGCCGGAATTTCTCGTCCTTGAACGCCTTGCTGAAGCGGTCCACCTCTTCTGGGGTTAAATTTAAATCTTCATATTTCGATCCGGGCTCCATGGTTGGTGTTTCGTTGCAGACACTGGAGACGTTCAAACTTTGCGTCCTTTCCAAACGAACTGTATCCCTCCGCTGAGTTAGTGCGCATTCGTATATAGATATCTTGGATTAGAGAGAGAAATGACGATTTTAAGCACAATAATGACCACATGAACACTGTTTAAGCATTGTCTACTTACACAGTTCACGGTGCTGTGTTGCTGTAACCCTGGTGTCGGTCTTTGAAATGGTAGCTAACAAACAAAGCGGTTGTTAAGGCTCAGACTCCAACAGATCAACTGCCTTACAAACTAAATACACTATAAACTGTACTAGGTGTCCTTTTTGATCAGATATAtagtgcaaaaatataaaacttttgctattattattattataaacgcGTAGCTTTCAGGAAATATGACTAATCTCATACCATTATGCACTggcaattcttatttttttattcttctatctctactattattatcatttattgtTTACAAGTACTAGACAAACATGCATGTACTCCTGTGGATACTGCTAACAACTGGAGCTATAATtgtagaaaatagaaaattattaatttcccaGATGAATCATCTTACAGGActgttaatcaattaatcaaattacaaCATACACTTTGATATATATGTTAAGTGATGTAGTCAAATAGATAATTGAAACTAGTAAAACCATTCCACTTTAATTAACTCAATTTTTGATTGAAAGTTTATAAActcagtgtgtttttatatataatatataacctTAGGCAGAGTTTGGCGTGCCAATGGGAATTCAGTACTTACTTTCATATAATCAATGAAGTTATAATTTTTCCATATTTcttattccatttattttccaaatgtatgtTATAATAGCTGAACATGTTCTTGTGaatgtaaattgttttatatacattggAATTCAAATGTGTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU188768 True 3536 lncRNA 0.43 1 12942586 12946121

Neighbor

gene id symbol gene type direction distance location
AMCG00000372 pole2 coding downstream 10397 12921383 ~ 12932189 (-)
AMCG00000373 NA coding downstream 22629 12912172 ~ 12919957 (-)
AMCG00000374 NA coding downstream 46136 12885744 ~ 12896450 (-)
AMCG00000379 LOC108411468,LOC106916349,LOC103155534,LOC102218377,LOC107100299,LOC103457917,LOC108257813,LOC107378076 coding downstream 95365 12833200 ~ 12847221 (-)
AMCG00000378 NA coding downstream 112436 12826593 ~ 12830150 (-)
AMCG00000375 NA coding upstream 4754 12950875 ~ 12952176 (-)
AMCG00000371 NA coding upstream 8865 12954986 ~ 12964206 (-)
AMCG00000382 NA coding upstream 191665 13137786 ~ 13146523 (-)
AMCG00000383 NA coding upstream 200409 13146530 ~ 13226435 (-)
AMCG00000389 NA coding upstream 658008 13604129 ~ 13607997 (-)
G149942 dync1h1,LOC107568493 non-coding downstream 117305 12817780 ~ 12825281 (-)
G149802 NA non-coding downstream 596876 12345409 ~ 12345710 (-)
G149801 NA non-coding downstream 638243 12304000 ~ 12304343 (-)
G149763 NA non-coding downstream 784115 12157749 ~ 12158471 (-)
G149756 NA non-coding downstream 844095 12090647 ~ 12098491 (-)
G149995 NA non-coding upstream 1195 12947316 ~ 12949350 (-)
G149996 NA non-coding upstream 3804 12949925 ~ 12950128 (-)
G150007 NA non-coding upstream 20839 12966960 ~ 12968715 (-)
G150072 NA non-coding upstream 653713 13599834 ~ 13682131 (-)
G150083 LOC100846954,LOC107575789 non-coding upstream 703272 13649393 ~ 13650005 (-)
G149847 NA other downstream 400276 12522520 ~ 12542310 (-)
G149751 NA other downstream 859372 12081543 ~ 12083214 (-)
AMCG00000336 NA other downstream 1094638 11840480 ~ 11847948 (-)
AMCG00000334 NA other downstream 1133761 11787089 ~ 11808825 (-)
AMCG00000300 NA other downstream 2883586 10029727 ~ 10059000 (-)
G150138 NA other upstream 877833 13823954 ~ 13826709 (-)
AMCG00000409 exoc5 other upstream 1056955 14003076 ~ 14028927 (-)
AMCG00000425 entpd5,LOC107586906,LOC105908609,LOC106571572,LOC106608092 other upstream 1299696 14245817 ~ 14261332 (-)
AMCG00000436 NA other upstream 1623841 14569962 ~ 14572432 (-)
AMCG00000457 NA other upstream 2177904 15124025 ~ 15137923 (-)

Expression


Co-expression Network