G149995


Basic Information

Item Value
gene id G149995
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 12947316 ~ 12949350 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU188769
CTCAGTACAAAGCTTTTTTGTAAGACATGCCATATTCACTACACTGCACCTGGAGTAAAGTTTGTGCCATTATTCTCCAGGGGTAGCCACTCTTCGCTGCCAATTGCCAACCAGCGTTAGAATTCCAAAAAGGAAGACATTTTGTCTCTTTGTCTACCCTTCACACTTAAACCTTGTGACTGGATCAACTACAAAGGTCAGTTCGAATTTGTAAGAACAGCAAACGGATCTTCCTGAGAATCACTGCCCCAGCGCACGGCTTGTGCTTCAGCAGAGCTCAGAGTTGATGAGCTATATCACAAATCTAACTTTAGTACACTGCTTTAATCATTGTCCGCAGATATCTTACaaaaagtgcattttcagtCCAGACGAGTCTTGAAAACTcaattttatagttttttctatcctgcagagaaaaaactgaaaaaaagccTTTTACTCTCCCTCAGTGCTGGCAGGCTTTCATCCCCCCTCATTAttataaaaggagaaaaagatCCATTAATGTTCCAAACTCACAAAGAAACACCCTGAGGAGAAAAAGTCTAGAGCTTTGTGCAGGTTCACCAGCACCTCTAACCAGACCGGGCTTCCTTCTCTGTGATTGATGTGCTCTTGGGCCCAAGCTCCTGCAGCAAGTTCTGCCTAACGAGGGAGTAATTCTAGAATGACACAAGACAGGAAAGCACTCCGAAATCGCACAGCAGTAACCGAACTTGATTCAGTGAATGGCCATATAGTGTGTGTAGCAGCAACAAATTAACTGCTGGAAAGGTAGCTGagggacaaaaaaaataaatgcagttggCACTTGACAACAAACAAATGGCAGTCTGACGCTACGATGTACTcattttgctttggtttttattttgctaccAATATCACAGTTAGGCTTGTAAATCCTGTAAGAGCAGCTGTCCTTGAATGCAGGCtgggaatgtttttttcctctctcctgtAATTAGCAAGGACTGCTCTTCAAAGTAAACATGTAGTGATCTGAAAGTAAATTGTAAAGCTGCTTGGGAACTCACGACAAATAATTcacagaataaatgtatttaagcagCTCTACAGGAATGTCCAGAGAATACCTATAATGGGAAAAAGCTTCTGAATGTACTggaagtttttctttttaattttcctgtgcttattttaaatgttaaataacacAGGCAGGCAGAAACGGTTTGAAAACACTCATTAACCAACACGAAATGCAGAATGGCTGTGAATCCTGTATCAGTTAGATTAATTCTTATTTAATCGTAATGCAAACACTTATATATTCACAACTGAATAACTGCACGAAAACAGCATTAATCCAGCTCATATAAAAGGGAGTTGTGAAATGAGAACGCAGCTGAGGTGGTGTGATTACTAATGACCTCAACTTCTCCATCGATAGTGTTCACTTCCCTAATGATAGCTGGGGCTGGCACGCTCTCCGGGAACTCAGTCTCTTGCTCGGTGGGGAGGTCGTCTTCATCAAGATCTGGCACATCTGCTTCTGCGACCTCCTCTTTGAAACACACCTCTTTCCTGGCTGTTTCACCTGTGCTGGCAACATCTAGTGTGCCTGTGGTCTGCTCCCTTGTAAAAGCAGGCTCATCGGGATGCAGATGGCCAGCTACGGGCTCTGTACTTTGTTCAGTTATGTCTGGACTGGGACTCCGCTCTGAGCTCTGAGCCCCAGGCCAGCATACTGCGAGAGAGGCGGGGTCTTCGGCCGGTCCCTGTGCTCTGGGATCTGTCCCCGTCTCTGGGATAGCCGCTCCGGGGGATGAGTTCTCCTCTCTCACAGTGCTGTCCATATTAGAGTGGAAGACAGATGCAGCTTTTGATTTTCCCCCTGgtttattactttgtttgtcCTGAGATTGATGAGAGATGTCAGCATCCCTCTGaaagaaatgttattaaaacGGTTAATCATCCACAAAGAAGTAGGGCCTAGAAGCATGAACAAGTTCGTAAATGCACAATGTACAACTGCGGTTAAATGTTAATGCTTTGCAATTTTAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU188769 True 2035 lncRNA 0.43 1 12947316 12949350

Neighbor

gene id symbol gene type direction distance location
AMCG00000372 pole2 coding downstream 15127 12921383 ~ 12932189 (-)
AMCG00000373 NA coding downstream 27359 12912172 ~ 12919957 (-)
AMCG00000374 NA coding downstream 50866 12885744 ~ 12896450 (-)
AMCG00000379 LOC108411468,LOC106916349,LOC103155534,LOC102218377,LOC107100299,LOC103457917,LOC108257813,LOC107378076 coding downstream 100095 12833200 ~ 12847221 (-)
AMCG00000378 NA coding downstream 117166 12826593 ~ 12830150 (-)
AMCG00000375 NA coding upstream 1525 12950875 ~ 12952176 (-)
AMCG00000371 NA coding upstream 5636 12954986 ~ 12964206 (-)
AMCG00000382 NA coding upstream 188436 13137786 ~ 13146523 (-)
AMCG00000383 NA coding upstream 197180 13146530 ~ 13226435 (-)
AMCG00000389 NA coding upstream 654779 13604129 ~ 13607997 (-)
G149994 NA non-coding downstream 1195 12942586 ~ 12946121 (-)
G149942 dync1h1,LOC107568493 non-coding downstream 122035 12817780 ~ 12825281 (-)
G149802 NA non-coding downstream 601606 12345409 ~ 12345710 (-)
G149801 NA non-coding downstream 642973 12304000 ~ 12304343 (-)
G149763 NA non-coding downstream 788845 12157749 ~ 12158471 (-)
G149996 NA non-coding upstream 575 12949925 ~ 12950128 (-)
G150007 NA non-coding upstream 17610 12966960 ~ 12968715 (-)
G150072 NA non-coding upstream 650484 13599834 ~ 13682131 (-)
G150083 LOC100846954,LOC107575789 non-coding upstream 700043 13649393 ~ 13650005 (-)
G150084 NA non-coding upstream 718212 13667562 ~ 13668139 (-)
G149847 NA other downstream 405006 12522520 ~ 12542310 (-)
G149751 NA other downstream 864102 12081543 ~ 12083214 (-)
AMCG00000336 NA other downstream 1099368 11840480 ~ 11847948 (-)
AMCG00000334 NA other downstream 1138491 11787089 ~ 11808825 (-)
AMCG00000300 NA other downstream 2888316 10029727 ~ 10059000 (-)
G150138 NA other upstream 874604 13823954 ~ 13826709 (-)
AMCG00000409 exoc5 other upstream 1053726 14003076 ~ 14028927 (-)
AMCG00000425 entpd5,LOC107586906,LOC105908609,LOC106571572,LOC106608092 other upstream 1296467 14245817 ~ 14261332 (-)
AMCG00000436 NA other upstream 1620612 14569962 ~ 14572432 (-)
AMCG00000457 NA other upstream 2174675 15124025 ~ 15137923 (-)

Expression


Co-expression Network