Gene
RNA
| Item | Value |
|---|---|
| gene id | G150007 |
| gene name | NA |
| gene type | non-coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030141.1 |
| NCBI id | CM030141.1 |
| chromosome length | 22147039 |
| location | 12966960 ~ 12968715 (-) |
| genome version | AmiCal1_2021_bowfin_Genome |
| id | name | namespace |
|---|---|---|
| GO:0008152 | metabolic process | biological_process |
| GO:0019538 | protein metabolic process | biological_process |
| GO:0043603 | cellular amide metabolic process | biological_process |
| GO:0043604 | amide biosynthetic process | biological_process |
| GO:1901564 | organonitrogen compound metabolic process | biological_process |
| GO:1901566 | organonitrogen compound biosynthetic process | biological_process |
| GO:0009058 | biosynthetic process | biological_process |
| GO:0009059 | macromolecule biosynthetic process | biological_process |
| GO:0043043 | peptide biosynthetic process | biological_process |
| GO:1901576 | organic substance biosynthetic process | biological_process |
| GO:0006412 | translation | biological_process |
| GO:0010467 | gene expression | biological_process |
| GO:0044237 | cellular metabolic process | biological_process |
| GO:0044238 | primary metabolic process | biological_process |
| GO:0044249 | cellular biosynthetic process | biological_process |
| GO:0044260 | cellular macromolecule metabolic process | biological_process |
| GO:0044267 | cellular protein metabolic process | biological_process |
| GO:0044271 | cellular nitrogen compound biosynthetic process | biological_process |
| GO:0071704 | organic substance metabolic process | biological_process |
| GO:0006518 | peptide metabolic process | biological_process |
| GO:0043170 | macromolecule metabolic process | biological_process |
| GO:0009987 | cellular process | biological_process |
| GO:0006807 | nitrogen compound metabolic process | biological_process |
| GO:0034641 | cellular nitrogen compound metabolic process | biological_process |
| GO:0034645 | cellular macromolecule biosynthetic process | biological_process |
| GO:0044391 | ribosomal subunit | cellular_component |
| GO:1990904 | ribonucleoprotein complex | cellular_component |
| GO:0022626 | cytosolic ribosome | cellular_component |
| GO:0022627 | cytosolic small ribosomal subunit | cellular_component |
| GO:0044445 | obsolete cytosolic part | cellular_component |
| GO:0005840 | ribosome | cellular_component |
| GO:0015935 | small ribosomal subunit | cellular_component |
| id | description |
|---|---|
| ko03010 | Ribosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU188783 | True | 1504 | lncRNA | 0.41 | 2 | 12966960 | 12968715 |
| TU188785 | False | 1032 | lncRNA | 0.40 | 3 | 12966960 | 12968715 |
| TU188787 | False | 1037 | lncRNA | 0.40 | 3 | 12966960 | 12968715 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00000371 | NA | coding | downstream | 2754 | 12954986 ~ 12964206 (-) |
| AMCG00000375 | NA | coding | downstream | 14784 | 12950875 ~ 12952176 (-) |
| AMCG00000372 | pole2 | coding | downstream | 34771 | 12921383 ~ 12932189 (-) |
| AMCG00000373 | NA | coding | downstream | 47003 | 12912172 ~ 12919957 (-) |
| AMCG00000374 | NA | coding | downstream | 70510 | 12885744 ~ 12896450 (-) |
| AMCG00000382 | NA | coding | upstream | 169071 | 13137786 ~ 13146523 (-) |
| AMCG00000383 | NA | coding | upstream | 177815 | 13146530 ~ 13226435 (-) |
| AMCG00000389 | NA | coding | upstream | 635414 | 13604129 ~ 13607997 (-) |
| AMCG00000390 | NA | coding | upstream | 657668 | 13626383 ~ 13652135 (-) |
| AMCG00000391 | NA | coding | upstream | 715312 | 13684027 ~ 13687008 (-) |
| G149996 | NA | non-coding | downstream | 16832 | 12949925 ~ 12950128 (-) |
| G149995 | NA | non-coding | downstream | 17610 | 12947316 ~ 12949350 (-) |
| G149994 | NA | non-coding | downstream | 20839 | 12942586 ~ 12946121 (-) |
| G149942 | dync1h1,LOC107568493 | non-coding | downstream | 141679 | 12817780 ~ 12825281 (-) |
| G149802 | NA | non-coding | downstream | 621250 | 12345409 ~ 12345710 (-) |
| G150072 | NA | non-coding | upstream | 631119 | 13599834 ~ 13682131 (-) |
| G150083 | LOC100846954,LOC107575789 | non-coding | upstream | 680678 | 13649393 ~ 13650005 (-) |
| G150084 | NA | non-coding | upstream | 698847 | 13667562 ~ 13668139 (-) |
| G150086 | NA | non-coding | upstream | 719056 | 13687771 ~ 13688177 (-) |
| G150115 | NA | non-coding | upstream | 771081 | 13739796 ~ 13746130 (-) |
| G149847 | NA | other | downstream | 424650 | 12522520 ~ 12542310 (-) |
| G149751 | NA | other | downstream | 883746 | 12081543 ~ 12083214 (-) |
| AMCG00000336 | NA | other | downstream | 1119012 | 11840480 ~ 11847948 (-) |
| AMCG00000334 | NA | other | downstream | 1158135 | 11787089 ~ 11808825 (-) |
| AMCG00000300 | NA | other | downstream | 2907960 | 10029727 ~ 10059000 (-) |
| G150138 | NA | other | upstream | 855239 | 13823954 ~ 13826709 (-) |
| AMCG00000409 | exoc5 | other | upstream | 1034361 | 14003076 ~ 14028927 (-) |
| AMCG00000425 | entpd5,LOC107586906,LOC105908609,LOC106571572,LOC106608092 | other | upstream | 1277102 | 14245817 ~ 14261332 (-) |
| AMCG00000436 | NA | other | upstream | 1601247 | 14569962 ~ 14572432 (-) |
| AMCG00000457 | NA | other | upstream | 2155310 | 15124025 ~ 15137923 (-) |
