G150072


Basic Information

Item Value
gene id G150072
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 13599834 ~ 13682131 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU188866
TTCTTGAAAAGGCTCAtagttaacatttatttatttatttatttatttatttgtattttgttacaggaaggaagaaagaaagacaacattaacataaaacaaaaacataaatccaCAGTAGCTCTCATCTTTTCACTTCATCAAAACATCTTATACAGCACACTTCTacaaaacacttacaaaaaaagcaaaactgtaGGTTCTCAATTATCCAGCTTAATTCAGGTGTTTAGTAGACCTGTTTCTGGTCGCTGAAGGATTCTGAACGTCGAACTGAGCGAACccaatttttgttttcaaatatatttctaatgCTTTGCCTCCCCTGAGATTAATCAGGTTTGAAATCCAGCGAACTTCAAAGAGCATAAAAAGCGGCAGAAATGGCCTAGTTCAAAAGCAGCTGAAGCCATTTGGTTTTAATTGGGAGATTTTGTTAtagttctttttttgttttttgtatttttctcctgtCGTTCCCATTTCACGTTTAACTGCCGAACCCCTCGCATGTCCTGCACTGGACTGAAAACATCCAATCTGTTTTCCGGGTCTAAACCCTTTCGTTTCAACTTCTGAGGCAGAAACTGCTTGAAGAGATCTCCAGCAGCATacttcctttatttgttttaagtaatgTCCCTGCTTACCCTGTTTATGTACTGATGCTGGCAGTGCTGTTCTGTACAATACtatagtgtaatatagtatatacgtgtgtgtgtgtgtgcttgtttattgtatacacagtatataaTGGATAGACAGTTTCATCAGAATAGAGTAAAGTGGTACGGCAACTGAGATCCTGTTTTGGGCTGCATTTAGCCATGCTGGCTGATTCTGAGAGAGCATGCCCTGGCCATGTTTCTGTTTAGCAGAGCCCACAGTGTCTGAAAAGCATCAGGGCACTATTTAAGTAGCATGCTCTGTCTTCATTTCAAGTATCTGCGCAGAGAGCTCTTTAAAACCACATCCTTTACAGACAACCCGCCCCAATCATAGCATCAGTTGTCACGTGGTTTAACACACACCTATAATGCTTTGATTCCAAGTGGTCCAGTTTGTGAACATGTTAAACATAAGTCACTTTAAACTAAGGGTGGTATTCTTAAGTATACGTTTAGATTTATAgcactgtaattattttaaaccatacatgtcattaaaaaaatcattggTGATAAAAAATACTTATTGGAGTACATAATGTTGAATTTGAGTTTCTTTTTAGTAATAACATCTAGAATAGCTACTAGCAATGCAGAACATTATTTttttgttgttg

Function

GO:

id name namespace
GO:0097458 obsolete neuron part cellular_component
GO:0001917 photoreceptor inner segment cellular_component

KEGG:

id description
ko04744 Phototransduction

RNA

RNA id representative length rna type GC content exon number start site end site
TU188866 True 1288 lncRNA 0.36 2 13599834 13682131

Neighbor

gene id symbol gene type direction distance location
AMCG00000383 NA coding downstream 373399 13146530 ~ 13226435 (-)
AMCG00000382 NA coding downstream 453311 13137786 ~ 13146523 (-)
AMCG00000371 NA coding downstream 635628 12954986 ~ 12964206 (-)
AMCG00000375 NA coding downstream 647658 12950875 ~ 12952176 (-)
AMCG00000372 pole2 coding downstream 667645 12921383 ~ 12932189 (-)
AMCG00000391 NA coding upstream 1896 13684027 ~ 13687008 (-)
AMCG00000400 NA coding upstream 9798 13691929 ~ 13693526 (-)
AMCG00000399 NA coding upstream 12547 13694678 ~ 13701429 (-)
AMCG00000398 NA coding upstream 25652 13707783 ~ 13729942 (-)
AMCG00000397 clg15h14orf28,LOC106581668,LOC106610876 coding upstream 64048 13746179 ~ 13752105 (-)
G150007 NA non-coding downstream 631119 12966960 ~ 12968715 (-)
G149996 NA non-coding downstream 649706 12949925 ~ 12950128 (-)
G149995 NA non-coding downstream 650484 12947316 ~ 12949350 (-)
G149994 NA non-coding downstream 653713 12942586 ~ 12946121 (-)
G149942 dync1h1,LOC107568493 non-coding downstream 774553 12817780 ~ 12825281 (-)
G150086 NA non-coding upstream 5640 13687771 ~ 13688177 (-)
G150115 NA non-coding upstream 57665 13739796 ~ 13746130 (-)
G150119 arf6,arf6a,ARF6,arf6.2,LOC106608083,LOC105893149,LOC104956700 non-coding upstream 74385 13756516 ~ 13761597 (-)
G150219 NA non-coding upstream 469457 14151588 ~ 14153846 (-)
G150306 NA non-coding upstream 813328 14495459 ~ 14495660 (-)
G149847 NA other downstream 1057524 12522520 ~ 12542310 (-)
G149751 NA other downstream 1516620 12081543 ~ 12083214 (-)
AMCG00000336 NA other downstream 1751886 11840480 ~ 11847948 (-)
AMCG00000334 NA other downstream 1791009 11787089 ~ 11808825 (-)
AMCG00000300 NA other downstream 3540834 10029727 ~ 10059000 (-)
G150138 NA other upstream 141823 13823954 ~ 13826709 (-)
AMCG00000409 exoc5 other upstream 320945 14003076 ~ 14028927 (-)
AMCG00000425 entpd5,LOC107586906,LOC105908609,LOC106571572,LOC106608092 other upstream 563686 14245817 ~ 14261332 (-)
AMCG00000436 NA other upstream 887831 14569962 ~ 14572432 (-)
AMCG00000457 NA other upstream 1441894 15124025 ~ 15137923 (-)

Expression


Co-expression Network