G150119 (arf6,arf6a,ARF6,arf6.2,LOC106608083,LOC105893149,LOC104956700)


Basic Information

Item Value
gene id G150119
gene name arf6,arf6a,ARF6,arf6.2,LOC106608083,LOC105893149,LOC104956700
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 13756516 ~ 13761597 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU188919
AGCTTATTAAATCTTACCCACTGAgtcacaattacaaaaacagataaTGGAAACTTTTTATtccacagtatttttttttttttttttacaccagcTACACTATCAAAAATCCCCCCCCTTTTCCCGATGCCACTAATGTGCACTAAAACGCAATGGCAACTGTTCCTTCCCAACACATGGGGCTGAACCACAAGGATTATGTATCCCCCGGATTGTTACAGTCTTGTTTGTGAAAACGAGAAAGAAATCATTTAAATGGCTAGTTTAATAAGATTTGTTACAATTACATTATGTcgttctgtacatttttttttattttttaatcagcatagcaaatagaagaaaacaaaaaaaaaaaacaaataaaacatgaatttatcatttaattacaGACCATATAggatttttgtaaatgtatgacAAGAGCCAATCCTTaagctgatttttttttgttggttgtttttttataagaaagttttaaaatcacacaccTTTTGGACCAGTTGTAGAAATGAAActgggaagaaagaaaaacgcgttaaatgtggaaaaaaaagggTCAGTTAAAAACCAACTACGTGTTCCTTTCAACTGCAGGATTAAGTTTACTCCCACCCTACTAGTGCGCTCCGCCTAGCCGGCGCAGCCCTGCTCAAGCCTCCTTCTCTGGATGCGTCATCTGCTGTGCAGCTGCAGATGAAGCAGTGCTGGGACTATTGGGCAGATAAGAAACTGCAAACTGATTACAAGAACTGAGCAGGGTCTGTCAAAGTCCAGCACTCCGGGCCCCCAAACGTGTGCTCGCCTAGGCTTGTGTAATAATACTATGACCGCGCTCCTgcagcgcagattcccgcagatctgcacaatcccaccgctcccattggtggagctggaaatctgcgcaacacgaaCGCGACCTAAAAgtcgattaaaaaaaacaactttaaaacctGTGGAAAGGGGTCCTTCAACGGGACGGGAACGCTTAGGAacgaatttaaaaaaatgcatatatatatatatatatatatatatatatatataagttgaGCATTTTCTTGTAGTCTGTGTACTTAGTACAACAACTACAATAATACTTCACGACGTTTGTAACAGATCTGGCTTAAATCTTGAAAAATCAAACGAAAAACAGATGGTGGCCCTTTCAACTCAAAAAGCCCCGCCACAGAAATGGTTAATACAAAATTTAGAGAGAGGCCTTATCTTGAGGATTTAAACCAATATTTGCGTTTACTAATTGAATAAACCGCAGGCCTGAACAGCATACATCAGCCAAATGAATGAAAAGTCGCAAATCTACAATCAAGCTCTAAAGAGGAAACAGGAGAacttaagaaaagaaaaaaaaatctgaaaagagagagagaaaaaaaaatcccccgcCCAGTCAAAGGAAATGACAGAATAAAACGAAGAAACCGAAAGACTTTGCAATAATCTCTGTAgttcctattaaaaaaaaaagtctctgaCGGGATATCACTCCAGTCATGAATAAAGAATGACCTTCTACAGAGCAAGCGCCAAACTAAAGCCAGCCAAATGGTCTTTTAAGAGAAATGATTAGTTATAGGGGTCATCATaataatcaaaagaaaaaaatataatcaaaacttctctttattatatattcttcTGAGAAGCCATGTTATCTGTTAATTGcttcttccttattttattcTCGTATTATTCTTTCGGGTTTTTTTGCTTGTTCTATCTAAACAGTCATCGGTGGACCATTAAGATTTGTAATTAGAAGTCAGCCAGGTGAGCCCCTCGTACAGTCCGTCCCCGGTGGTCGCGCAGGAGGGCTGCACGTACCAATTCCTATCCCGGATGCGGGTCAAGCCCAGTTTCTCCTGGATTTCGTGCGGCTTCATGGCATCGGGCAGGTCTTGCTTATTGGCAAAAATCAAGATAATGGCGTCCCTCATCTCCCGGTCGTTAATGATGCGGTGCAGCTCCTGCCGGGCCTCGTCTATCCGGTCGCGATCCGCACAATCCACCACGAAGATTAACCCCTGAGTGCCCGTGTAGTAGTGCCGCCACAGGGGCCGGATCTTGTCCTGGCCCCCCACGTCCCACACGTTGAATTTGACGTTCTTGTAGGTGACCGTCTCCACGTTGAAGCCCACGGTGGGGATGGTGGTGACGGACTGTCCCAGTTTCAGTTTGTAAAGGATGGTGGTCTTCCCGGCGGCATCAAGTCCAAGCATCAATATTCTCATCTCCTTGTTGGACACCATTGACGGGACACCAGGTGAAGAAATTCAAAAAATGACAGCTGGCAGCAGAAGTGGATACAGTTGTAAACAATGAAGCAACTTTCAATGCCGATACAGTAGCAACAATGTGTCCATGTGAATAGACGACTCCCTCTCGGTGTCTCTCGTCTGAACAGCCAGGATAATCCACAAGGACACCAGGGCAGTCAGAGATCCTCTACAAAAGACACAGGTGGCACGTTTGGGGCAATCACAAGTCAAACGAGGCCATCACGGCCGTCACAAGAGCGCAGGAATCCAGCTGCCTTTACAAAGAGGGTGTGGGGGGACAGCGATTTCAAATCCGGATTCAGGAAAAGCGCCGGTATCCACACAGGCGTCCCCTAAAAAACCGGGCCTGCACGTCCTCGGAAAAGGGGGGAtcaacttcaaaaataaaaaagtgactCGGCTGGAGGAGCAGCACGGTCTCCGAGCAGGCCCTCTCGAAAGCCTGCCGTAGTTCGCACACTTCCTCTTGGCGTGTCTCCTCCGCGGTGTCCGCCGGCCCCGATtcggttttttgtttgtttcagcgAGTCCTGGCTTCGGGCTCCCGCCGGGTCTCCCGCACGTCGGTCGGCGACGGAACAGCTTGGGCTGCGGCAACGCCAAAGGTCATCGGCTCATCCGAGCGCTTCCTCTGCTCGTCTCCTGCTCTGCGGCCCCCCGGTCCCCGGATTGATCCACCCCGCTctcgcctctctctctcgcctgcTCGCCCGCTCTCAGTCGCTCAGCTCGGCGGCTCTGTACCGGAAAAGGCGCGGACCCAGATCACCCGCCACTTCCTCTCGCTTTCAGgcagctttttttccccctccttctGGTTTCCCCTGTGCGCATGCGCGTAGTAGTTACAGCCGGCAGACTTTGACAGCGCCGGGCGCGTTACGAAACGGAAGCCATGTGGGCTCCGGTGCTCAGAATGGGTGGAGCCAAAATGGCGGACAATGGGGCTTCGGTTTCATCACATGGAGACTTAGCAGGTCGGAGCAGGGGTGGGCAAGAGGGATCCAATACAAGAGCATGCAGACAGCCTGTGATGCAACGTCATCGTACGTGAAGAGGTGGTTCGTTATGACGTAGGCGTCTCTCAGTGGGCGCTGCGACGGATTTCAAATAATGCCGCAGACCACGCCGCACTGGTGATTGACAGCAGGCCCAGCCTCTCCCGGAGGAGTGCTCTCTGTCTGTGCGCTGTCTGAGACACCGCCTCCCAGCTATATTAGCACCCCCCGTGTAAAAATAGTTTGTGTTAGTGTGTGATGCTGGTGTAAAAGTGaagtgtttttggttttatttgggCTGTTTACAAATGCATGATCCTAAAAACGTACCAGTACCACAACTTGTCATAGCTCCtgattgcattttataatgaattttCCTCCTactttgaaagtaaaataaactgtaggGAGGTAGTAATTACACACTGTCAAAATAGTGCATCACCTATTTCTAATAAAACCCATGAATTGCGGCCAGTATAAATGAAGCACTGTTTTAAGTCAGTAAGTTTCCTTCTAGTGGTTACAATAATTGTGCCAACCTGCATCTTGCTTTTGGAAATATAAAACACtacaactttttctttttaatcctaCATGGGTAAAGTCCATgtgctgtaaataaaacatgcaccCGACTTTTAGTTGAAGGATTCTAGTTAGGCTTACTGTGAACCACACAAGTAGAAGTAGAAGTAGGTCTTTCCAAATATAGTGTgtgcaaaattgtatttaaatacacaaaacaacctCTAATGCAACTTTAGTACAAGTGGTAGTGCTCCCCAAGGCCAGTGTTCAGGGCAAATAGCCATTTACTGAAAGCAATACACGTGAGATTCAGCATGAATCAGTTGCAAACATTTTTGCTCCCCTTATGTCGAAACACTAAAGTTTTACATCAACATCATGACCCCAGGGGATTTTTACAACAGCTGCACAATTCACATGAGTTGTGTGTTAAgcaattttaaataacaaaacagatgCTTTTTTTAGAGGAAGAAAATAGAACAATAGTCCAAATGAATTTCACGAAATGTCTTGACGATACAGCTCGATGACAGTTGGAAACACGCTCTTCAACATTGGTCTGGCACAGTTATTTATAGACATTAACAAACccaattttgtttctgttgggGTTAGGAAGTTGACACTATCTGTAATCAGATATACTGAGACCATTAATTAGCTCAAATAAGCAACACCACAGTGTGTAAACAGCTAAAGAATTTGATGGAAGGCCAAGGCATTATCAAgagaattatttattatttattagatctgtataattgtaaatataaaatatggcTAGTATCCGTTTTGGTTTATGTGATCG

Function

symbol description
arf6a Predicted to enable GTP binding activity. Acts upstream of or within intrahepatic bile duct development. Predicted to be active in endocytic vesicle; recycling endosome membrane; and ruffle. Is expressed in intestinal bulb; liver; and pancreas. Orthologous to human ARF6 (ADP ribosylation factor 6).
arf6 Enables GDP binding activity; GTP binding activity; and thioesterase binding activity. Involved in several processes, including positive regulation of actin filament polymerization; regulation of Rac protein signal transduction; and ruffle assembly. Located in several cellular components, including Flemming body; cytoplasmic vesicle; and filopodium membrane.

NR:

description
PREDICTED: ADP-ribosylation factor 6

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU188919 True 4643 lncRNA 0.44 4 13756516 13761597

Neighbor

gene id symbol gene type direction distance location
AMCG00000397 clg15h14orf28,LOC106581668,LOC106610876 coding downstream 4411 13746179 ~ 13752105 (-)
AMCG00000398 NA coding downstream 26574 13707783 ~ 13729942 (-)
AMCG00000399 NA coding downstream 55087 13694678 ~ 13701429 (-)
AMCG00000400 NA coding downstream 62990 13691929 ~ 13693526 (-)
AMCG00000391 NA coding downstream 69508 13684027 ~ 13687008 (-)
AMCG00000405 NA coding upstream 29069 13790666 ~ 13792970 (-)
AMCG00000393 otx2,LOC107085600,LOC108232166,LOC100707476,LOC107392362 coding upstream 183262 13944859 ~ 13948608 (-)
AMCG00000408 slc35f4,LOC106593636 coding upstream 292756 14054353 ~ 14061825 (-)
AMCG00000414 NA coding upstream 320904 14082501 ~ 14093284 (-)
AMCG00000413 NA coding upstream 404284 14165881 ~ 14167002 (-)
G150115 NA non-coding downstream 10386 13739796 ~ 13746130 (-)
G150086 NA non-coding downstream 68339 13687771 ~ 13688177 (-)
G150072 NA non-coding downstream 74385 13599834 ~ 13682131 (-)
G150084 NA non-coding downstream 88377 13667562 ~ 13668139 (-)
G150083 LOC100846954,LOC107575789 non-coding downstream 106511 13649393 ~ 13650005 (-)
G150219 NA non-coding upstream 389991 14151588 ~ 14153846 (-)
G150306 NA non-coding upstream 733862 14495459 ~ 14495660 (-)
G150427 NA non-coding upstream 1128937 14890534 ~ 14891706 (-)
G150476 NA non-coding upstream 1467300 15228897 ~ 15229292 (-)
G150485 NA non-coding upstream 1489028 15250625 ~ 15250829 (-)
G149847 NA other downstream 1214206 12522520 ~ 12542310 (-)
G149751 NA other downstream 1673302 12081543 ~ 12083214 (-)
AMCG00000336 NA other downstream 1908568 11840480 ~ 11847948 (-)
AMCG00000334 NA other downstream 1947691 11787089 ~ 11808825 (-)
AMCG00000300 NA other downstream 3697516 10029727 ~ 10059000 (-)
G150138 NA other upstream 62357 13823954 ~ 13826709 (-)
AMCG00000409 exoc5 other upstream 241479 14003076 ~ 14028927 (-)
AMCG00000425 entpd5,LOC107586906,LOC105908609,LOC106571572,LOC106608092 other upstream 484220 14245817 ~ 14261332 (-)
AMCG00000436 NA other upstream 808365 14569962 ~ 14572432 (-)
AMCG00000457 NA other upstream 1362428 15124025 ~ 15137923 (-)

Expression


Co-expression Network