G150219


Basic Information

Item Value
gene id G150219
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 14151588 ~ 14153846 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU189048
tttattaacagtaatacatttatatatatatatataatatataaatatacacaatatacattatCAACACAGACTTACAGACCtttcctgaaatgttttttatttacaacaaaaattCCTTTCCGATAACATCCATTATAAAGTTATGAGAAAACACTGATGTCCTATGCAAAGTGGTTATGTATGTTTCAATATGCGTGTAGTGGTTAGGAGTagcggtcagggctctggactctggagcggATGGGATgtgggacactgctgctgttcccttGAGCGAGACACTTTAcctggattgctccagtaaagtAACCCAGCTAAGTTAATGGGTAattaatattgtaacaattgtaagttgctctggataagggcatctgttcAGCAACATAACGATACCGCTCTATTTCATACAGAGAGGTTTATTTGGCGTGTTGATGTATAAGACTTCGAGATTTGACCATCTTTGAGAGTCCACTGTGAACTACATTCCCCCAGAATAAATAGGATAGAAATAGACGATTGATGGAGGGATTTGCTTTCCCGAATAATAATGAGAAagcaaatatacagttaaataataCCAGTTTTTGGTTCATGTTTTTAGAATGTAAATAGCCTAAGTGGAGCAAGGCGAGTCACAAAATGAGTGATGAATAATGTAGACATTTTTGCCCCATATAGGTCCCTTAAAGTCTAAACACACTGCTGGGACATAATGAGCTTAGGACAGAACACAGATGACCTCAATTATCTCCTTATCAGAAGTGGTGCGTCTCTGGTCGCCCACTTCACCAGTCACCTACCTGAGGGGAATTGTTTCGGAAGTGAAGACATTTCAGATGGAAGGGAATTGAAATGAATCAAAGTTGAGAACCATCTTCAAAACCATTTAGGGCAtgggtaaaaaaacaacaacaggaatgTGATGGAACTGTTCATTATCATAGGGTCCCTCTCCATTCACAGCCTGTTACACTTCTCTTCAATCCTGTTTTTTATGCTTGGAATaccattattttaatgataactGTTGAAAGGGCTCTTCAAGTCTAATTGCCTGGCAGTACATAGGGACAGCTCATGATAACGCCACGGTATTTCATTGCCTAATTAATAAATCCTGATTTTCAAGTGAGTATTTCTTCATCCTGACATGTAGTCCTGTTCTTTTCGGTGGTTGACTGTATTGTGGTGCCGCGACTTCCCCTTAGGATCACAGGTGCACATGAAGGTAGAGTTAGGTAACACTTATCTCATGATTATATCTTCCAATTCTGCCTCACGGGAGAAAAACAATCTTCTGAATTGTCAGTGGCACCTCTCAGTTGAATATTAGAAGTAGCTCATGAGCATATGAGAttatgacaaacaaacacaacaccagAGAAATAGATAAATAGGTCATATTTGCACCAGGATGTGATCAACTGTAAGGAATTGCCCAAGAGGGAGACTGCCACCTACTGCAAAAATAATACGAGAAATAATTCAGTTAAGGAGTTTGTACTTTGTGCCGATTTAGATCAATTGAATACATGATCATACAGTAGTCCTGTATCATTTATTCAGGTGGATTTTACATAGCCTTTTCTTTGAGATGCTGAGATGACACCCTTTACTCCTTCACAAGCACTCCACACCTCCATTCAGACACGTTAATAGCATAATTTATCAGCAGTTACACGTGTATAAACCTCCTCTTAACGAGTGGTATGATTCTTGCAGTCCTcaaggtctctctctctctccatttgtGATGTGTTTCAGTCCAGGGAAAGGCTCTGTACAGCACATGGTTTAAAATAGCAAAGTTCCTGTTATTGATGACTATTGCCTCTATTCTTAGTAATAAATACTTTAAGTGTTTTagaaagaaatgaaacaaataaaaatcgaGAGATCTCCGTCCTCCCTGATGCGATTAGTCTTTAAACGTTGAGCTTGGTCCTTCACAGCCATCCCGCTCCGCACGCCTGTCCGGACCGGCCACTTGAGGGGACGAGCCGTGGCTGTCTCCGGATGGCAGACCGGCTCCGGCCGTCTCACTCCCGCGGGAGCCCAGTCCCCGTCACTCAAGCCCAGATGAAGTACGCAATATCCGATAGAAAGTGCTTAGAAGACTGCCAACGTTGTTAACTCTGACcagaaaaggaataaataaaaggagCCAGGAGCTGCACTTCAGTTACCTGCGAGGGGGCTGGCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU189048 True 2207 lncRNA 0.41 2 14151588 14153846

Neighbor

gene id symbol gene type direction distance location
AMCG00000414 NA coding downstream 58304 14082501 ~ 14093284 (-)
AMCG00000408 slc35f4,LOC106593636 coding downstream 89763 14054353 ~ 14061825 (-)
AMCG00000393 otx2,LOC107085600,LOC108232166,LOC100707476,LOC107392362 coding downstream 202980 13944859 ~ 13948608 (-)
AMCG00000405 NA coding downstream 358618 13790666 ~ 13792970 (-)
AMCG00000397 clg15h14orf28,LOC106581668,LOC106610876 coding downstream 399483 13746179 ~ 13752105 (-)
AMCG00000413 NA coding upstream 12035 14165881 ~ 14167002 (-)
AMCG00000428 NA coding upstream 58823 14212669 ~ 14214918 (-)
AMCG00000427 NA coding upstream 76873 14230719 ~ 14235167 (-)
AMCG00000426 aldh6a1,LOC107664467 coding upstream 122126 14275972 ~ 14285610 (-)
AMCG00000418 NA coding upstream 189691 14343537 ~ 14350726 (-)
G150119 arf6,arf6a,ARF6,arf6.2,LOC106608083,LOC105893149,LOC104956700 non-coding downstream 389991 13756516 ~ 13761597 (-)
G150115 NA non-coding downstream 405458 13739796 ~ 13746130 (-)
G150086 NA non-coding downstream 463411 13687771 ~ 13688177 (-)
G150072 NA non-coding downstream 469457 13599834 ~ 13682131 (-)
G150306 NA non-coding upstream 341613 14495459 ~ 14495660 (-)
G150427 NA non-coding upstream 736688 14890534 ~ 14891706 (-)
G150476 NA non-coding upstream 1075051 15228897 ~ 15229292 (-)
G150485 NA non-coding upstream 1096779 15250625 ~ 15250829 (-)
G150502 NA non-coding upstream 1107541 15261387 ~ 15263576 (-)
AMCG00000409 exoc5 other downstream 122661 14003076 ~ 14028927 (-)
G150138 NA other downstream 324879 13823954 ~ 13826709 (-)
G149847 NA other downstream 1609278 12522520 ~ 12542310 (-)
G149751 NA other downstream 2068374 12081543 ~ 12083214 (-)
AMCG00000336 NA other downstream 2303640 11840480 ~ 11847948 (-)
AMCG00000425 entpd5,LOC107586906,LOC105908609,LOC106571572,LOC106608092 other upstream 91971 14245817 ~ 14261332 (-)
AMCG00000436 NA other upstream 416116 14569962 ~ 14572432 (-)
AMCG00000457 NA other upstream 970179 15124025 ~ 15137923 (-)
AMCG00000464 batf other upstream 1059556 15213402 ~ 15222743 (-)
AMCG00000475 NA other upstream 1135457 15289303 ~ 15291255 (-)

Expression


Co-expression Network