G150502


Basic Information

Item Value
gene id G150502
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 15261387 ~ 15263576 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU189406
ATTCTGTTCCTTCCAAATATTGCCCATTTAAtcccaacacacacatgaactagaataaatcaatgtaaagtCTATTAGGTTTCATTCATCCCCCAAAGGATTTATAGTGTCAAGAATCGAAGATACCaatttaaaaccacaataaaacaaacagtctTCATTTCTCTTTGCAGATATTTATTGTCTGTTATAACAGGCAACCAGTGCGGTTGTGTTGAGGTTTAACCAATTTTAAACCTTccaaaagtagaaaaataaaattaaaaatataaatatcagaaGTTAGtttcaacaattaaaacacaaaacgtTTTCACAGAAAACTTTCATACTCCGATTTAGACCACTCAGACCATGGTTTTGACAAAGCACACCATTTATAATTATCACAAACATGAAATAGTGTACAACAGTAAATTGTCCATCAGCTAGAAATCAAACGGTCGGgttattttaaatcagttcaCTATTGCCATTAAACACATTAAGTCTGCTGCACTAatacaaaatttgaaatatctagcaccaataaattgaaaataagtaGTACAGAACATTGCATGATTCAACATGCTTTAGACAACAGCTTTCAGGATATTTTGTGAATTTAACAATAAGCATGCTTTTTGCTACATACTTGGAAGAGGCAAGtatggtttaatatttaaaggataaaaataaaaaccttttaggTATGTCCATGCCATAGCCCTAGGATCATTGTACCCTGCATCACATTAGAAATGTAGTTGGAAGTCCATAATATAACTAAAGTTTCCTTACAAGGCAAGAAGGGTGGGAGAGCTAAGAGAGTCAGATGACTGATCATTGCTGCTGCTACCTCTTTGAGTTACTCCACAGTTAGGCAGCGACTCCGATTCAGGGTAAGTGAACACAAAGGAAGACGTGTAAGTAGTGCAGGATGGGGTGCAGGTTACTACTGGGGTGCACAGAGGCTCCAGGTCAGTAGTTCCTGGTGTGTAAAGTGGTTCCCATTCAGGTGCATAGAAGGAACTGGACAAGTCCATATCTGGGACTGATCGTGCCGTTTCTACCGTGTTCTTCTTGAATGATGCAAACAGATCAAATGATTCCTCTTTTAATTCTAGGGAGCTGTCCAAATCTGACATTTTCACCGTTGAAGCACAAGCTTCTGAAGCCAAGGGAAAGAGGGATGCTTTGGAAGAGGTAGCCATAGACTCGGTTGAGCTGGAAGCCTCTGGAATTGTGTTGTGAATCTGGAAACTTGAATCTTCACATATGCGTAGAGGAGTGGAGACTGTGGTGTCTGGAAATCTAGTGTCCAGGTCTGTGGGAATCTTGCAGGCAGGCTTATGTGCTGCCAAGATGAACTCCAGTTTCTCCTTTTCCTTCATGAGATTGGCAATTTCAGTTTGCAGAGCAGATTTCTCATCCTCCAAATTGTCAGTTCAGATTGCAGGGTGTCAGTGAGTTCTCTCCTTCTATTGCGGCACTTTGCTGCAGCCAttttattcctctctctccGAACCTTCCgtttctcttcttcttcaggCGAAAGctatacaagaaaaacaaattcttaAATTTAGATCCTACGATCATTCCAATGTCATATTTTCAGTCAGTTCACTTGCCCTCTACAGGAACCGACTGCAGGTCTCTCTGCAGTGGTGCTATATATAGAAAGCTATTGCAGACTCTTCATGACCTGAATTTCAAACAGGAGCCTCAGTAGGAGGCAGTGATGCTGCATAAAGCATTCCTATTTCTTGTGAAGATAtatgcatgtttaaaatattactctggtgatttttctatttttgcacAGAGAGAATGAGAAGTTAGAATTTCAAGGTACCTGTTCAATTTTGCCCCTCCTGCCAGTGCTGTGACCTCTGGTTCCAGCAGTTGTGATCATCCCTGACCTGGAGTACACAGGGCTGGACCCCTGTACACCGTAAGGGTGGGCTCTGCTGTGGGATGGGGCCACAGAAGAGATGAGAGTAGTTGGCTGGACCATCCACTGCAGATCTGGGCTTGTAGAAATGGCCGTGACAGTTGGGATGAAAGAGGCACTTGAAACCGTCAGATCAGTGAA

Function

GO:

id name namespace
GO:0030162 regulation of proteolysis biological_process
GO:0052547 regulation of peptidase activity biological_process
GO:0051336 regulation of hydrolase activity biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU189406 True 2080 lncRNA 0.41 2 15261387 15263576

Neighbor

gene id symbol gene type direction distance location
AMCG00000467 NA coding downstream 5558 15253292 ~ 15255829 (-)
AMCG00000463 atf3,jdp2,LOC106611045 coding downstream 19234 15230288 ~ 15242153 (-)
AMCG00000466 flvcr2,LOC108242486 coding downstream 49516 15187199 ~ 15211871 (-)
AMCG00000458 ttll5 coding downstream 80870 15141396 ~ 15180517 (-)
AMCG00000459 ift43,LOC106590872 coding downstream 152936 15092142 ~ 15108451 (-)
AMCG00000465 NA coding upstream 15913 15279489 ~ 15288455 (-)
AMCG00000476 NA coding upstream 34301 15297877 ~ 15309522 (-)
AMCG00000477 ttc8,LOC106611037,LOC106591546 coding upstream 47425 15311001 ~ 15320215 (-)
AMCG00000480 NA coding upstream 120081 15383657 ~ 15390950 (-)
AMCG00000479 ptpn21,LOC106601406,LOC107560165 coding upstream 128293 15391869 ~ 15411274 (-)
G150485 NA non-coding downstream 10558 15250625 ~ 15250829 (-)
G150476 NA non-coding downstream 32095 15228897 ~ 15229292 (-)
G150427 NA non-coding downstream 369681 14890534 ~ 14891706 (-)
G150306 NA non-coding downstream 765727 14495459 ~ 14495660 (-)
G150219 NA non-coding downstream 1107541 14151588 ~ 14153846 (-)
G150504 NA non-coding upstream 7820 15271396 ~ 15273123 (-)
G150497 NA non-coding upstream 12387 15275963 ~ 15278056 (-)
G150514 NA non-coding upstream 30643 15294219 ~ 15295205 (-)
G150581 NA non-coding upstream 303183 15566759 ~ 15568750 (-)
G150586 NA non-coding upstream 315313 15578889 ~ 15580921 (-)
AMCG00000464 batf other downstream 38644 15213402 ~ 15222743 (-)
AMCG00000457 NA other downstream 123464 15124025 ~ 15137923 (-)
AMCG00000436 NA other downstream 688955 14569962 ~ 14572432 (-)
AMCG00000425 entpd5,LOC107586906,LOC105908609,LOC106571572,LOC106608092 other downstream 1000055 14245817 ~ 14261332 (-)
AMCG00000409 exoc5 other downstream 1232460 14003076 ~ 14028927 (-)
AMCG00000475 NA other upstream 25727 15289303 ~ 15291255 (-)
AMCG00000482 NA other upstream 198270 15461846 ~ 15479049 (-)
AMCG00000469 LOC108413331,LOC107549545,LOC107582175,LOC108269530,LOC108423442 other upstream 234596 15498172 ~ 15527390 (-)
G150729 NA other upstream 1541619 16805195 ~ 16834326 (-)
AMCG00000518 NA other upstream 1570183 16833759 ~ 16836603 (-)

Expression


Co-expression Network