G150581


Basic Information

Item Value
gene id G150581
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 15566759 ~ 15568750 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU189508
ggacaagaaAGAATCCAGTGCTAATTAGGGTTTTAGGACGTCCTGTGATCTCCTTAAAACACGAACAAACGAGAAACAACAGCAACCACCAccaaaaatattgaattggtTCAACAGAAGGAGGGTAAATAACTCGGACACATGACacagctttcttttttcctgcttGTCATCTCAAAAGGCTTCAACCTGAcatcatcttaaaaaaaacacaataaaaaacagaacgTGTTCCATTCCAGCTGCTCATCTGAAGATGAAGCACTTTCAAGAGAGATTGGACCTGGTGCTCGGGAGATGAATCTGAGGGAAGAAAAACTGAATTCCAGAAGGGAACACAACCTTGCAGCCCCAGAGTTTGGCAGCTTTGAAGATCCCAAGCTGTCCAGAGTTTGagcccctttttattttttactgaagAATGAGCGGCGCGGTCTGTTGGGTTAGTTCTCTGGGATGGTTGTGGACCACAGAAAGGCTCTATCTCACAGCATGTCCTATGTTATCTTTCTCCTGATGCAGTGCAAGGCCCTGGTTTTCAATTGCAGATGAGAATCTTTTCATGGAAACTTCCCCAACAGTTATGCGTGC

Function

GO: NA

KEGG:

id description
ko04724 Glutamatergic synapse
ko04713 Circadian entrainment
ko05031 Amphetamine addiction
ko05033 Nicotine addiction

RNA

RNA id representative length rna type GC content exon number start site end site
TU189508 True 591 lncRNA 0.44 2 15566759 15568750

Neighbor

gene id symbol gene type direction distance location
AMCG00000481 NA coding downstream 147189 15415530 ~ 15419570 (-)
AMCG00000479 ptpn21,LOC106601406,LOC107560165 coding downstream 155485 15391869 ~ 15411274 (-)
AMCG00000480 NA coding downstream 175809 15383657 ~ 15390950 (-)
AMCG00000477 ttc8,LOC106611037,LOC106591546 coding downstream 246544 15311001 ~ 15320215 (-)
AMCG00000476 NA coding downstream 257237 15297877 ~ 15309522 (-)
AMCG00000472 NA coding upstream 48213 15616963 ~ 15619029 (-)
AMCG00000494 NA coding upstream 684387 16253137 ~ 16266313 (-)
AMCG00000493 NA coding upstream 708248 16276998 ~ 16278955 (-)
AMCG00000487 bcl11ba,bcl11b,LOC107583625,LOC108270293,LOC107680755 coding upstream 1081321 16650071 ~ 16659677 (-)
AMCG00000488 NA coding upstream 1118355 16687105 ~ 16689646 (-)
G150514 NA non-coding downstream 271554 15294219 ~ 15295205 (-)
G150497 NA non-coding downstream 288703 15275963 ~ 15278056 (-)
G150504 NA non-coding downstream 293636 15271396 ~ 15273123 (-)
G150502 NA non-coding downstream 303183 15261387 ~ 15263576 (-)
G150485 NA non-coding downstream 315930 15250625 ~ 15250829 (-)
G150586 NA non-coding upstream 10139 15578889 ~ 15580921 (-)
G150588 NA non-coding upstream 50471 15619221 ~ 15619788 (-)
G150626 NA non-coding upstream 188103 15756853 ~ 15758160 (-)
G150634 NA non-coding upstream 279285 15848035 ~ 15871468 (-)
G150661 NA non-coding upstream 664208 16232958 ~ 16233189 (-)
AMCG00000469 LOC108413331,LOC107549545,LOC107582175,LOC108269530,LOC108423442 other downstream 39369 15498172 ~ 15527390 (-)
AMCG00000482 NA other downstream 87710 15461846 ~ 15479049 (-)
AMCG00000475 NA other downstream 275504 15289303 ~ 15291255 (-)
AMCG00000464 batf other downstream 344016 15213402 ~ 15222743 (-)
AMCG00000457 NA other downstream 428836 15124025 ~ 15137923 (-)
G150729 NA other upstream 1236445 16805195 ~ 16834326 (-)
AMCG00000518 NA other upstream 1265009 16833759 ~ 16836603 (-)
AMCG00000533 NA other upstream 1984968 17553718 ~ 17578383 (-)
AMCG00000529 NA other upstream 2116815 17685565 ~ 17719171 (-)
AMCG00000521 NA other upstream 2307619 17876369 ~ 17878350 (-)

Expression


Co-expression Network