G150586


Basic Information

Item Value
gene id G150586
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 15578889 ~ 15580921 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU189513
CCTAGAGAGAGGATGGAAAGAGTAAATACCTGTCAAGCATATGACTTTTCTTTGTGCAGTTCAAAACCAAAAGGCTGCAACCTGAAGAATCGATGTGGCAGCCCTGCAAAAGGAGGATCAACATGCTGTGTTTGTCCAGGATCGACATGCTGTCTTTGTCAAGGATCACGCACAACGTTTTTCCTGATCTTCAAATATTAATGTTGTCCCCAGTTTGTCGTGCTGTGTTTGTCcacaatcaaatacaaattcttCAAGTTCAAATATTAAAGTTTGTAGGAGccaatttatgttttcatatacatttataatatgatgttttatttaacttatatttctgtactttgcatttattttgcattcagtataaatcaattaattcaattatcattaatttgtaaattagatcattaatgtaattgataatTGGATGAGAACAGGGAAGGAGTGAAATAGTTCAGAGAACAGGTGGGGGTTTTATCATGTTCAAAAAGGAAGTTTTGCATCAAACTATCATACTCCAGCTTtcaaagaaattataaatattatggACACATTAGAAATGGTTGGTATCCACAATTGGTTAGATATGCAAGGAGAATAAAGCTGTGTGGGTTACTTCTTGATATCCTGTGCAATGGTCCCAAAAGATAAAAAAGTAGTAATAGGAGACAGACTAGCTCCGACCATCACTTGATTggtctttatattattattattatttatttcttagcagacacccttgtctaaggcgacttacaaaatattagagcaatacaaagtacaataatacagtaatagaaTATAACTCTACGAGGGAGAGGATATACATTTTATCAAAGTCTTCTAAAGGACAGTAActatttacacaaaacaaaacaatttattaattatttttttgtaaataacatGGCATCTGCAAATCCTCCTGTTGTTTGGGATACCTGTAAATGTGTCTTTAGAGGTCACTATATTCAATATTcagcacaaatacataaacaatcaaGAGCCAAAGAACTTCAATTaggaaaggaaatacaaatcttaataaataaaataaaatggataatacagataataataTAAGTAAGTGCAAGCTTGGAGAAGAAGCAGAGAACTAGAAGACTATTTTCAGGATAGAcctaatgtaatatattttaaaaagatgtaatGTGGAGAAAAGTGTACAAAATAGGTTTTTAATCTACATTACAGAAATGCAACATAGATAAACTTATTACAGCTGGAGGAATAATAGCTGAATCCCCAGAAGACATTCTTAAAGAATGGGTTAAATATTATAGAGATTTGTTCATCTTGGAGACTCCAATATCACTTAATGATAACACGTTTAAGGTATTTTATCCCAATAATTATACTAAATTATCagatgaacaaaaataattgtgtgaTGGACAAATTACAGAAGACGAACTTTTAATAGCAGTACTGTCCTTTCAGTAAGGGAAAACTAGGGCTTGATGGAATTTCTGATAGAGGTTTACCACATTTTCTATAGCGCACTTACAAAAAAATtgcttgattgttttaattattcctATAAAAATGGTAGTATAtcagacacacaaaaagaagGACTTATATCATTATTACTTAAACAGAATGCAGATGGACAATATAAAGATCCAAtatactaaaattaaaattaaaatctaattgGAGACGGCTAACCTTACAATGctgtaatgttaaaatattgGCAAAACGCATTGGATTAAGAATGAACAGATATA

Function

NR:

description
protein SPT2 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU189513 True 1754 lncRNA 0.31 2 15578889 15580921

Neighbor

gene id symbol gene type direction distance location
AMCG00000481 NA coding downstream 159319 15415530 ~ 15419570 (-)
AMCG00000479 ptpn21,LOC106601406,LOC107560165 coding downstream 167615 15391869 ~ 15411274 (-)
AMCG00000480 NA coding downstream 187939 15383657 ~ 15390950 (-)
AMCG00000477 ttc8,LOC106611037,LOC106591546 coding downstream 258674 15311001 ~ 15320215 (-)
AMCG00000476 NA coding downstream 269367 15297877 ~ 15309522 (-)
AMCG00000472 NA coding upstream 36042 15616963 ~ 15619029 (-)
AMCG00000494 NA coding upstream 672216 16253137 ~ 16266313 (-)
AMCG00000493 NA coding upstream 696077 16276998 ~ 16278955 (-)
AMCG00000487 bcl11ba,bcl11b,LOC107583625,LOC108270293,LOC107680755 coding upstream 1069150 16650071 ~ 16659677 (-)
AMCG00000488 NA coding upstream 1106184 16687105 ~ 16689646 (-)
G150581 NA non-coding downstream 10139 15566759 ~ 15568750 (-)
G150514 NA non-coding downstream 283684 15294219 ~ 15295205 (-)
G150497 NA non-coding downstream 300833 15275963 ~ 15278056 (-)
G150504 NA non-coding downstream 305766 15271396 ~ 15273123 (-)
G150502 NA non-coding downstream 315313 15261387 ~ 15263576 (-)
G150588 NA non-coding upstream 38300 15619221 ~ 15619788 (-)
G150626 NA non-coding upstream 175932 15756853 ~ 15758160 (-)
G150634 NA non-coding upstream 267114 15848035 ~ 15871468 (-)
G150661 NA non-coding upstream 652037 16232958 ~ 16233189 (-)
G150731 NA non-coding upstream 1242108 16823029 ~ 16840596 (-)
AMCG00000469 LOC108413331,LOC107549545,LOC107582175,LOC108269530,LOC108423442 other downstream 51499 15498172 ~ 15527390 (-)
AMCG00000482 NA other downstream 99840 15461846 ~ 15479049 (-)
AMCG00000475 NA other downstream 287634 15289303 ~ 15291255 (-)
AMCG00000464 batf other downstream 356146 15213402 ~ 15222743 (-)
AMCG00000457 NA other downstream 440966 15124025 ~ 15137923 (-)
G150729 NA other upstream 1224274 16805195 ~ 16834326 (-)
AMCG00000518 NA other upstream 1252838 16833759 ~ 16836603 (-)
AMCG00000533 NA other upstream 1972797 17553718 ~ 17578383 (-)
AMCG00000529 NA other upstream 2104644 17685565 ~ 17719171 (-)
AMCG00000521 NA other upstream 2295448 17876369 ~ 17878350 (-)

Expression


Co-expression Network