G150626


Basic Information

Item Value
gene id G150626
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 15756853 ~ 15758160 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU189562
GGCCCACATTTTGgagtattattgcactttatttCAGCAGTCAATTCACAAACACGCCATGCATTTCTGATAAATACTTGTGTATTGAAATCTTTGACTCATGACCAGACTTGACTTTTACCTTTCCTACCcttcaaaacacacagataacagtaacacaaacaaatgatgcatagtttcattttatttttaatttaaagggaaattaataaaggggtttgaaataaaagtacaaCGTAAAGGTTGTCTTCACAGGTTAATCTGATCTTGACCTTTATATAACGTGCTGCGTGCAAAGTCGCCTTTATACCTTCTTGAAGTGAACCACTTTACTGTGCTGTAGGATCTGTTATTTTGCCCATAAAGAGTATACTCTTGGTAGTTTTCTCAAGGATAAGCAAGATGAAAGGTCTATTTAAAGCCATTGTCTGAGGTAGAGACATGGGCATCAAATCCATATGGACAGCAGCTGCCGCCTCTGTGCCCTTCTCATCCACATTAAGAACTGCTTTATGAGTCCCTTGGACACCTTCAGCTTAACCTCTTCCGAAATCCCAGAGAAATCTGCGGTGTTATCGAAGGCATGGACAATCCCCATCTCTGTGAGGATCTCCTTCAGAGAGTAGGTTGCAGAAGCAGAGAATTTGGGCAAATACAGATCCACAGAGCTTCTATACAGTGAATCATGCCATCTCCTGATGTGTTCCTTACATATGAagccctccacctcctccatTTTGCCTTCATCGGGCAAGATAATCATCATCAATGCACTGCCCTTGTAAGGAAGCTTCAGTACTGAAGTAAAATTCTGGTAGTCATAATAGAAGCCGTAGCGGCCGGTTCTCTTCATCATATCAACAGACACGGTCTTATTCTCGTTCACGTGGAAGTCACTCTTTTGGGTCAGTTTGGAATCAAAAGGCTTTTCCCATTTGC

Function

GO:

id name namespace
GO:0030168 platelet activation biological_process
GO:0007596 blood coagulation biological_process
GO:0050817 coagulation biological_process
GO:0004806 triglyceride lipase activity molecular_function

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05020 Prion disease

RNA

RNA id representative length rna type GC content exon number start site end site
TU189562 True 939 lncRNA 0.41 3 15756853 15758160

Neighbor

gene id symbol gene type direction distance location
AMCG00000472 NA coding downstream 137824 15616963 ~ 15619029 (-)
AMCG00000481 NA coding downstream 337283 15415530 ~ 15419570 (-)
AMCG00000479 ptpn21,LOC106601406,LOC107560165 coding downstream 345579 15391869 ~ 15411274 (-)
AMCG00000480 NA coding downstream 365903 15383657 ~ 15390950 (-)
AMCG00000477 ttc8,LOC106611037,LOC106591546 coding downstream 436638 15311001 ~ 15320215 (-)
AMCG00000494 NA coding upstream 494977 16253137 ~ 16266313 (-)
AMCG00000493 NA coding upstream 518838 16276998 ~ 16278955 (-)
AMCG00000487 bcl11ba,bcl11b,LOC107583625,LOC108270293,LOC107680755 coding upstream 891911 16650071 ~ 16659677 (-)
AMCG00000488 NA coding upstream 928945 16687105 ~ 16689646 (-)
AMCG00000496 setd3,LOC100195551 coding upstream 964014 16722174 ~ 16736751 (-)
G150588 NA non-coding downstream 137065 15619221 ~ 15619788 (-)
G150586 NA non-coding downstream 175932 15578889 ~ 15580921 (-)
G150581 NA non-coding downstream 188103 15566759 ~ 15568750 (-)
G150514 NA non-coding downstream 461648 15294219 ~ 15295205 (-)
G150497 NA non-coding downstream 478797 15275963 ~ 15278056 (-)
G150634 NA non-coding upstream 89875 15848035 ~ 15871468 (-)
G150661 NA non-coding upstream 474798 16232958 ~ 16233189 (-)
G150731 NA non-coding upstream 1064869 16823029 ~ 16840596 (-)
G150852 psmc1,LOC108443803,LOC108428647,LOC107581524 non-coding upstream 2006430 17764590 ~ 17765401 (-)
G150853 NA non-coding upstream 2007787 17765947 ~ 17766735 (-)
AMCG00000469 LOC108413331,LOC107549545,LOC107582175,LOC108269530,LOC108423442 other downstream 229463 15498172 ~ 15527390 (-)
AMCG00000482 NA other downstream 277804 15461846 ~ 15479049 (-)
AMCG00000475 NA other downstream 465598 15289303 ~ 15291255 (-)
AMCG00000464 batf other downstream 534110 15213402 ~ 15222743 (-)
AMCG00000457 NA other downstream 618930 15124025 ~ 15137923 (-)
G150729 NA other upstream 1047035 16805195 ~ 16834326 (-)
AMCG00000518 NA other upstream 1075599 16833759 ~ 16836603 (-)
AMCG00000533 NA other upstream 1795558 17553718 ~ 17578383 (-)
AMCG00000529 NA other upstream 1927405 17685565 ~ 17719171 (-)
AMCG00000521 NA other upstream 2118209 17876369 ~ 17878350 (-)

Expression


Co-expression Network