G150729


Basic Information

Item Value
gene id G150729
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 16805195 ~ 16834326 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU189689
NNGGCCCCCGCTCATGCCTCGGACAAAACTTTGCACAGATGGAGGCTAAAGTCGTNNNNNNNNNNCTCTTACAGAGGTTTACATTTCAGCTGGTTGCAGGGCAATCATTTGAAATCATGGACACAGGAACCCTAAGGCCTAGAGATGGAGTCGTGTGCACAATCAAGGCTCGAagcaaaatgaacaaataaccCGAGTCATTATTGACTTAAATGATCCATATTGTCTGCCTGCTTCACACAATCAAAAAAGGATATTAGTAAATTACATAACTTCTATGAAACATACCAAAATATTAGT
>TU189691
NNNAGTCAACATCCACAACCTGGTGAACGCTGTGACCCTGGATGTCATCGCAAAGGTAGCATTTGGAATGGATTTGAATTTGTTGGATGATAACACATCTGCTTTTCCCAAAGCCATCGCATTGTGTTTGAAAGGGATGATCTACTTTATTAGAAAGCCATTCATGCACcttcTTCCTTGGAATTGGAAGTTTGTGAAGGAGGTAGAGGATGCTGCAGAGCTTCTACGCAGCACTGGAAGAGAGTgcattgaaaacagaaaaagagcGATGAGAAATAAAGAGGACGTGCCAAAGGATATACTGACCAAAATTCTGCAATGTGCTGG
>TU189692
NNNAGTCAACATCCACAACCTGGTGAACGCTGTGACCCTGGATGTCATCGCAAAGGTAGCATTTGGAATGGATTTGAATTTGTTGGATGATAACACATCTGCTTTTCCCAAAGCCATCGCATTGTGTTTGAAAGGGATGATCTACTTTATTAGAAAGCCATTCATGCACcttcTTCCTTGGAATTGGAAGTTTGTGAAGGAGGTAGAGGATGCTGCAGAGCTTCTACGCAGCACTGGAAGAGAGTgcattgaaaacagaaaaagagcGATGAGAAATAAAGAGGACGTGCCAAAGGATATACTGACCAAAATTCTGCAATGTGCTGTGGATGAAGGAGGATATGATGATGAACACATGTTGGACAACTTTGTCACATTCTTTATAGCAGG

Function

GO: NA

KEGG:

id description
ko02010 ABC transporters
ko04976 Bile secretion
ko04975 Fat digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
TU189689 False 300 lncRNA 0.39 3 16805195 16829740
TU189691 False 327 lncRNA 0.43 3 16808261 16834326
TU189692 True 390 TUCP 0.42 4 16808092 16834326

Neighbor

gene id symbol gene type direction distance location
AMCG00000519 LOC105902331,LOC107678669,LOC107747948,LOC107555299,LOC107572128 coding downstream 10874 16793575 ~ 16794321 (-)
AMCG00000497 ccdc85c,LOC107740595,LOC107668618 coding downstream 46757 16749389 ~ 16758438 (-)
AMCG00000496 setd3,LOC100195551 coding downstream 68444 16722174 ~ 16736751 (-)
AMCG00000488 NA coding downstream 115549 16687105 ~ 16689646 (-)
AMCG00000487 bcl11ba,bcl11b,LOC107583625,LOC108270293,LOC107680755 coding downstream 145518 16650071 ~ 16659677 (-)
AMCG00000516 LOC108413947 coding upstream 31483 16865809 ~ 16883174 (-)
AMCG00000500 sptlc2,LOC107751731 coding upstream 50718 16885044 ~ 16903230 (-)
AMCG00000499 NA coding upstream 93282 16927608 ~ 16935797 (-)
AMCG00000501 snw1,LOC107681047 coding upstream 103451 16937777 ~ 16942568 (-)
AMCG00000534 NA coding upstream 622663 17456989 ~ 17459798 (-)
G150661 NA non-coding downstream 572006 16232958 ~ 16233189 (-)
G150634 NA non-coding downstream 933727 15848035 ~ 15871468 (-)
G150626 NA non-coding downstream 1047035 15756853 ~ 15758160 (-)
G150588 NA non-coding downstream 1185407 15619221 ~ 15619788 (-)
G150586 NA non-coding downstream 1224274 15578889 ~ 15580921 (-)
G150852 psmc1,LOC108443803,LOC108428647,LOC107581524 non-coding upstream 930264 17764590 ~ 17765401 (-)
G150853 NA non-coding upstream 931621 17765947 ~ 17766735 (-)
G150865 calm1,LOC107396020,LOC102293206,LOC102778633,LOC103380713 non-coding upstream 944902 17779228 ~ 17800956 (-)
G150965 NA non-coding upstream 1265252 18099578 ~ 18100896 (-)
G151071 NA non-coding upstream 1539472 18373798 ~ 18374097 (-)
AMCG00000469 LOC108413331,LOC107549545,LOC107582175,LOC108269530,LOC108423442 other downstream 1277805 15498172 ~ 15527390 (-)
AMCG00000482 NA other downstream 1326146 15461846 ~ 15479049 (-)
AMCG00000475 NA other downstream 1513940 15289303 ~ 15291255 (-)
AMCG00000464 batf other downstream 1582452 15213402 ~ 15222743 (-)
AMCG00000457 NA other downstream 1667272 15124025 ~ 15137923 (-)
AMCG00000533 NA other upstream 719392 17553718 ~ 17578383 (-)
AMCG00000529 NA other upstream 851239 17685565 ~ 17719171 (-)
AMCG00000521 NA other upstream 1042043 17876369 ~ 17878350 (-)
AMCG00000539 NA other upstream 1172348 18006674 ~ 18009850 (-)
AMCG00000559 NA other upstream 1470759 18305085 ~ 18307793 (-)

Expression


Co-expression Network