G150852 (psmc1,LOC108443803,LOC108428647,LOC107581524)


Basic Information

Item Value
gene id G150852
gene name psmc1,LOC108443803,LOC108428647,LOC107581524
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 17764590 ~ 17765401 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU189862
CTTGTGGTTCAACAAGACGGAGCAGCCCGGCTCGAGCAGATCCTTGTCCACAAAGGACAGAATACTGACATAGTGCTCCGAGCCCACGGACGTGGACACTATAGCATGGTTGTCATCTATGATCTCCTCCAGGGTTCCCACAGACATGGGCGTCCCCCTCAGATCATCAACCTTTGACCTCTCTTCCTCTTGTTTCTCCTCTAAGGGCTTCATCTGTTCCTGATTTCTGATGAATTCCTCCTCCATGAGCAGGTAGTCCTTAATTCTTTCCAGTTTCAGCAGCTTCAGCCGACACTGAGTGTGAGGAGTGACTAAAGGCAACTTGCTGGCAGCATCTGGGCCCtttgatttcttcttcttcttccccacTCTGGTGGGGATCGGAGGCTCgtatttcttcttcttatcCTTGTCATCCTTCTTCCCTCCACCTGGTCCGTGTCCCCCACTCTGGCTTTGAC

Function

symbol description
psmc1 Enables RNA binding activity. Predicted to be involved in negative regulation of neuron death; positive regulation of proteasomal protein catabolic process; and protein catabolic process. Located in cytosol and nucleoplasm. Part of proteasome complex.

NR:

description
PREDICTED: 26S protease regulatory subunit 4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU189862 True 461 lncRNA 0.51 4 17764590 17765401

Neighbor

gene id symbol gene type direction distance location
AMCG00000510 foxn3,LOC107680774,LOC107751738,LOC107755777,LOC107583483 coding downstream 124026 17612034 ~ 17640564 (-)
AMCG00000511 NA coding downstream 164100 17597460 ~ 17600490 (-)
AMCG00000535 gtf2a1,LOC107581504,LOC106571676,LOC107712853,LOC107721813 coding downstream 211723 17545363 ~ 17552867 (-)
AMCG00000532 NA coding downstream 256035 17481663 ~ 17508555 (-)
AMCG00000531 NA coding downstream 298888 17462406 ~ 17465702 (-)
AMCG00000528 NA coding upstream 2682 17768083 ~ 17772745 (-)
AMCG00000523 NA coding upstream 8399 17773800 ~ 17789068 (-)
AMCG00000524 ttc7b,LOC106601235,LOC107654850 coding upstream 55370 17820771 ~ 17865282 (-)
AMCG00000522 brms1la,brms1l,LOC107682295,LOC107693096 coding upstream 102026 17867427 ~ 17873428 (-)
AMCG00000544 NA coding upstream 176156 17941557 ~ 17943170 (-)
G150731 NA non-coding downstream 923994 16823029 ~ 16840596 (-)
G150661 NA non-coding downstream 1531401 16232958 ~ 16233189 (-)
G150634 NA non-coding downstream 1893122 15848035 ~ 15871468 (-)
G150626 NA non-coding downstream 2006430 15756853 ~ 15758160 (-)
G150588 NA non-coding downstream 2144802 15619221 ~ 15619788 (-)
G150853 NA non-coding upstream 546 17765947 ~ 17766735 (-)
G150865 calm1,LOC107396020,LOC102293206,LOC102778633,LOC103380713 non-coding upstream 13827 17779228 ~ 17800956 (-)
G150965 NA non-coding upstream 334177 18099578 ~ 18100896 (-)
G151071 NA non-coding upstream 608397 18373798 ~ 18374097 (-)
G151119 NA non-coding upstream 671882 18437283 ~ 18453200 (-)
AMCG00000529 NA other downstream 45419 17685565 ~ 17719171 (-)
AMCG00000533 NA other downstream 186207 17553718 ~ 17578383 (-)
AMCG00000518 NA other downstream 927987 16833759 ~ 16836603 (-)
G150729 NA other downstream 930264 16805195 ~ 16834326 (-)
AMCG00000469 LOC108413331,LOC107549545,LOC107582175,LOC108269530,LOC108423442 other downstream 2237200 15498172 ~ 15527390 (-)
AMCG00000521 NA other upstream 110968 17876369 ~ 17878350 (-)
AMCG00000539 NA other upstream 241273 18006674 ~ 18009850 (-)
AMCG00000559 NA other upstream 539684 18305085 ~ 18307793 (-)
G151087 NA other upstream 646087 18411488 ~ 18412525 (-)
G151088 NA other upstream 647439 18412840 ~ 18413465 (-)

Expression


Co-expression Network