G151291 (LOC108257835)


Basic Information

Item Value
gene id G151291
gene name LOC108257835
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 18989075 ~ 18992844 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU190486
tttgtaagtcgccctggataagggcgtctgctaagaaataaagaatCACAATATGAAGCTGCTCTGTGAATGATAAGGTCTATAGCTGCGATCTGACCACTACAGACATAGCAAACGTGGGAAAAGTAATATGCAATGAATCTGGACAGTTAGCAgtagcaatatttatttatttatgtatttatttatttattatagctCAGGGCAAGGGGACACAGGGGCAAACAACAAGAGCAATGTAACAGCAAGCTGTATGATGAAAACTAGATATAAAGTGCACttttacaggagagctgagccacacagggGAATAGGCTAAAACAGGTTTCACATTACATTATCTCTTGGCATTAGCGGTTTGTgccaaaagtattcatccctcAGTTTGGTAGTTCATTCAGAAACTGATTAATCAATTTGGCCATTCAGCAAGCAGTTTGTCCATTGAGTAGTACATTGATTATTGCATTAATCTGTCAAGTCATTGTGTTAATCTGTCTATCTGGTGTGTCAATTCACCCATCAATGCATATCTGACTGACTAgtcacattaattacatagttgatTCATATTAAACTTACAAATCCAGCATCACATAAAACTCTGCCATTTCAACCACTCAGTGTTAGCAATGTATTGATAAAGATCGTATATAAAGCACCTTCCTGTGCCTATggttatacatgtatgtttgcTTTCCCTTTGAAACGCTAATGCTCTCATTCTCAGTATGTTTGGAGTTCTCAATAtagttgtattgtgttttgcacttcatgGCCACCGTATGCTTCAACACAAACTTTGAGATTCATTTTGAAGCCATTGTCAATACTGTAGGGCGGACGCATCTCAATCCATTCTGACGTCTATCTCTTGTCCATCTATAGGGGGCAGCATTGTGGACGTGTGTAGCGTTCCCACAGATAACAGCTCACAGCAGGGGCAGCTCGGCCCAGTCCTGTGGGATCATGTTCCTGCAGGGGTTGTGGGTTGCTTTAAATTAGCTGCTGTTTTTATCcgtgtgttttgatttcttctcATCCTGTCCGCCTGGTAGTGACTTTAGTGCCCAACCCACGGGCAGCCGGGTGCTGTGGAAACCATGTACCCCTGAAGGACGCGTCTCAGCTCAGTAGCCTTGACGCCCAGCTCCCCTCGCCATGCTGAACCTGCATCAACAGTCTTCGCCCCATTCCAGCCCCAGCAAAACCACATCCTCCCACCGTGGAGCGGAGCAGCCCACCTGGACTCGTAGTGCAGGTAGGTTCTCTCTTTCCCAGCTAGTCCAAAGGCGTTCACGATAAAAAACTTCACACAGGTCAAGCACGAGCCACTCGGTGCATTGTTGAGCATGGCAGACTGTGTTTATTGTCATGTAAAAAGGGTTTACACTATACATCCCATAAATAGCTTTCCAATATAAATCAGATAATGTACACACCGCTATTTCGTATGATCTGCGGTCTTTCGGGACCGTGCAGTAGTTGCCATAGAAAATCGAAATCTACTAAAGTagcaggattattatttttatacaatcaagaccccccccccaccatttatacatgttttttacatAGTTTATGCTGTAAATCACAACTAGAATCAAACCCAAGAGTATcgtaacaataaatacagtgtgTCAGACCTCGTGCAGATAAAGCAGTACCCATAAAAGTACCCACAACCATTATAGGGATCTTCAGAAACTGATCGGTCCTGATAGCATCTCCAGTTTACCAGCTCTGAGCCTCTCCCATCGAACGTGGCAGGAGTCGACTCGAGAGGACAAATAAATTACACCCGGTGATGCAGCCGGGGCGAAAGGCGCACCGGTCTTCCTGAGGACAACACTGAATAGAAAGTCTCACACGCTGGAGAGAGGAAGCGAATCCTTTTACATACAATCTTTGAATAAgcccttaaaaaacaaaaaatcaccaACTGAAGAAATAAGTTTCTCACTCAAATTcgcactgaaataaatattctaaTCTGTGACTCGGACAGGGATTTATCCTAGAAAAGACTCTGGATATTGTTTCTGTTGCACACAGGCTTCAGTGGGGGGACACGGGTGACCCCTGAAACAAAACTCCTGGCTTCCCTCCTGTCCCCTCAATTAGTCTAATTAgctaattaaacacatttaagatTCCTCTCCAAATCTCcacttttaatgatttatgttaaaaaaaactgtaaaagcaaacaaaacaaaaaaaactgtgaagaaatgtaatatatgtcCAGCTGGCAGAATAATTGGATTCATTAAGGTAATTGAGAGCTTAAACAGGCGCCTGGAAGACTGAAGATGGACGCCCTCCCCCGCAGAAAAGGGTAATTATCGCATAAAATGCAGCATTATAAACaacccaaacaaaaacaagaaaaaacacgCATTCGAACCATTCCCAGGTATGtacaaaagattaaaatatagGCCGTGTCCTATGCTATAAAAAGAGGTCCAGTGTCCGCAGCAGGAGCACCGACTGGTCCAGTGATTGATGCTGTCCCCGGGATTTGGGTTCCCCCCCATTCTCTCTCACGTGGGCGGGGGGCCGTTGGTGTAGCGCAGCATGGGGTAGAAGGAGCGGGCGAAGTTGTTGGACAGGGTGCAGCTGTAGTCCTCCTCCGACAGGGGCACCAGGCAGgccagcaccagcagcagcaggaacagCAGGTGGAGGGGGAAGGCGGCCCTCAGGACCCGGTAGAAGAAGGACCTCGGAGGGGAGACGTCGCGCTTCGCACTCctggagagaggaggaggtctgaacaatgacaaatgtatatagatgtatatagagactgttttaaaagtatttatgtatttccacTAGtggttgtatttgaaaatgtaaacttaTTTGTACAGCAACAACATCGCACAACCTAAGAAGATTAAAGACACAATGTGAGATTACTAACGTCGTCCCAACAAGGAGGGACTTTTAATAATGTTCAGATACGTTCAActagtaattgtgaaacagGATACAAAAAAAGTAACTGGAAATACATAGTTGACGCAGTGTGTGACGGCCGCTGGGATCTCCACACAACCTGACAACTTGGTGTTTAGCAGCCAGTTGAAAAAGCTTTTATTGActtatccccccaccccctgcctgATCTTTGGCAGTGTCTGTACAGATCAGCAGGGGAGCCTCCTGGCACAGTGTGGCGTGACAAAGGGCAGATATCTGGCGAGTGCCACACAAGCCTGGATTCCACCCCCTATCTATCCCCACGCCAGAACCCTCTGCCACCCACTTTATGTGGAACTTGTCCAGCGCGGGGCGGCGCTGTCAACCTGCGCAATTAAAGCTCACAGCGCGGGACATGGC

Function

NR:

description
PREDICTED: nesprin-2-like isoform X10

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU190486 True 3357 lncRNA 0.45 2 18989075 18992844

Neighbor

gene id symbol gene type direction distance location
AMCG00000591 NA coding downstream 113010 18865608 ~ 18876065 (-)
AMCG00000592 NA coding downstream 129658 18856936 ~ 18859417 (-)
AMCG00000590 ppp2r5e,LOC106599033 coding downstream 135805 18833701 ~ 18853270 (-)
AMCG00000588 gphb5 coding downstream 157906 18824901 ~ 18831169 (-)
AMCG00000589 kcnh5,LOC107736800,LOC107683602 coding downstream 184764 18774982 ~ 18804311 (-)
AMCG00000598 NA coding upstream 8978 19001822 ~ 19023749 (-)
AMCG00000597 NA coding upstream 34174 19027018 ~ 19034045 (-)
AMCG00000584 NA coding upstream 99299 19092143 ~ 19109259 (-)
AMCG00000585 NA coding upstream 118881 19111725 ~ 19114713 (-)
AMCG00000586 NA coding upstream 134168 19127012 ~ 19128176 (-)
G151218 NA non-coding downstream 132578 18856300 ~ 18856497 (-)
G151198 NA non-coding downstream 164407 18791375 ~ 18824668 (-)
G151167 hif1a,LOC102795631 non-coding downstream 342898 18644869 ~ 18646177 (-)
G151150 NA non-coding downstream 404962 18583408 ~ 18584113 (-)
G151133 NA non-coding downstream 423360 18494649 ~ 18565715 (-)
G151393 NA non-coding upstream 405878 19398722 ~ 19400093 (-)
G151416 NA non-coding upstream 488484 19481328 ~ 19483307 (-)
G151446 psma3,LOC107729246,LOC107725600 non-coding upstream 619406 19612250 ~ 19619068 (-)
G151447 NA non-coding upstream 628293 19621137 ~ 19623387 (-)
G151678 NA non-coding upstream 1818696 20811540 ~ 20812254 (-)
G151090 NA other downstream 573234 18415522 ~ 18415841 (-)
G151089 NA other downstream 574517 18414055 ~ 18414558 (-)
G151088 NA other downstream 575610 18412840 ~ 18413465 (-)
G151087 NA other downstream 576550 18411488 ~ 18412525 (-)
AMCG00000559 NA other downstream 681282 18305085 ~ 18307793 (-)
AMCG00000599 NA other upstream 340873 19333717 ~ 19336742 (-)
AMCG00000613 NA other upstream 510855 19503699 ~ 19531054 (-)
AMCG00000618 timm9,LOC107729247,LOC107689314,LOC107693171 other upstream 651020 19643864 ~ 19646607 (-)
G151593 NA other upstream 1639245 20632089 ~ 20634946 (-)
AMCG00000635 NA other upstream 1751535 20744379 ~ 20752657 (-)

Expression


Co-expression Network