G151393


Basic Information

Item Value
gene id G151393
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 19398722 ~ 19400093 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU190615
CTCAACCAACACAtcaaatgaacacacacacagacacaaaatgaCGGCCGAGTGACTCAAACTGAGGATTTCTCTCCCTTCGTCTCTGGGTGTACAATGCCATTTCCTGCCCTGCTCTGCGCCGCTGCTCGCTGTGCGGGAACACGGCGCTGCTCCTGCCGGTCGCCCACAATGGCTGACTGCAGACGGAGACGCTGACCCTGAACTCCCGCGCCTGCGACCTGGTCCTGGGACTGCTCTGCCAGTGCAACGACGCCCCACACATGCTGCATCTCAAGAGCTCTGTGGTCATGATTTTCACGGCAGGAAGTACAGAAAAGCACTCTGGGGGAGCTTGAAAAAGCCCAGTCCGCTCCATGTCCAGGGAACCAACCGCTGGAACgcaaagaagaaaacatctgGAATTCCAACaaggtttaaaaacaaaggcGCCGATTTGAGTGGGACGGCACTCTTGAGATGATTAATAACCTGCAAGTGCCAGATGTTTCTTTGACAAACTCAGAAAATAACTGTGGCGCTACATCTTGGCACACCTGTTCAACAGCATCAGAAGCATCGAAGCAGACGTTATGTGGACTATCTGAGCGACTTATGACAAATACACTCTCTCGCACACGTGGGACTCTTGAAAATTAATTTGTCGGAGCTGTGAGCCGTCGAGAGGAATCCAGTCGGAAATGGCTCGAAGCAGATTGAGGATTTTGTAAGAGAAACCTTTCGGATGACAAAACTAGTCATTATGTTCTGCTACAGCTGGTAAAGAGTAATGAgctacttaaaaatataatcagggAGGCCAGCTGTGTGTGACGGGTTCATACTTCTGTTGGGAACttattgtttactttaaaatacatacattttggaCTGTAAAATTGGTCTACTTTTCATTTTGgc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU190615 True 900 lncRNA 0.48 2 19398722 19400093

Neighbor

gene id symbol gene type direction distance location
AMCG00000607 NA coding downstream 16591 19378217 ~ 19382131 (-)
AMCG00000608 LOC107589661,LOC107679124 coding downstream 21101 19361226 ~ 19377621 (-)
AMCG00000609 cfl2 coding downstream 40507 19354563 ~ 19358215 (-)
AMCG00000603 snx6,LOC106611228,LOC107693189,LOC106602024 coding downstream 47454 19342882 ~ 19351268 (-)
AMCG00000601 LOC107586642 coding downstream 56711 19337492 ~ 19342011 (-)
AMCG00000611 sstr1,sstr1a,LOC107729242,LOC107586672,LOC107693103,LOC107734409 coding upstream 85846 19485939 ~ 19487042 (-)
AMCG00000619 NA coding upstream 152268 19552361 ~ 19593549 (-)
AMCG00000615 NA coding upstream 482371 19882464 ~ 19887052 (-)
AMCG00000625 gpr135,LOC107564991 coding upstream 570385 19970478 ~ 19971836 (-)
AMCG00000624 l3hypdh,LOC107684001 coding upstream 572278 19972371 ~ 19974873 (-)
G151291 LOC108257835 non-coding downstream 405878 18989075 ~ 18992844 (-)
G151218 NA non-coding downstream 542225 18856300 ~ 18856497 (-)
G151198 NA non-coding downstream 574054 18791375 ~ 18824668 (-)
G151167 hif1a,LOC102795631 non-coding downstream 752545 18644869 ~ 18646177 (-)
G151150 NA non-coding downstream 814609 18583408 ~ 18584113 (-)
G151416 NA non-coding upstream 81235 19481328 ~ 19483307 (-)
G151446 psma3,LOC107729246,LOC107725600 non-coding upstream 212157 19612250 ~ 19619068 (-)
G151447 NA non-coding upstream 221044 19621137 ~ 19623387 (-)
G151678 NA non-coding upstream 1411447 20811540 ~ 20812254 (-)
G151725 NA non-coding upstream 1514348 20914441 ~ 20914680 (-)
AMCG00000599 NA other downstream 61980 19333717 ~ 19336742 (-)
G151090 NA other downstream 982881 18415522 ~ 18415841 (-)
G151089 NA other downstream 984164 18414055 ~ 18414558 (-)
G151088 NA other downstream 985257 18412840 ~ 18413465 (-)
G151087 NA other downstream 986197 18411488 ~ 18412525 (-)
AMCG00000613 NA other upstream 103606 19503699 ~ 19531054 (-)
AMCG00000618 timm9,LOC107729247,LOC107689314,LOC107693171 other upstream 243771 19643864 ~ 19646607 (-)
G151593 NA other upstream 1231996 20632089 ~ 20634946 (-)
AMCG00000635 NA other upstream 1344286 20744379 ~ 20752657 (-)
AMCG00000653 NA other upstream 1526598 20926691 ~ 20935429 (-)

Expression


Co-expression Network