AMCG00000714 (ccnyl1,LOC107698526,LOC107733650,LOC107738507,LOC107663902)


Basic Information

Item Value
gene id AMCG00000714
gene name ccnyl1,LOC107698526,LOC107733650,LOC107738507,LOC107663902
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 1452612 ~ 1463637 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000714
ATGGGCAACACGGTGTCCTGCTGCGTGTCGCCCGGGGGGAGCCCGAAGGTCAGCCGCAGGAGGCCGCCGGAGCGGGTGGATGGCTACAAAGTGGACACTGACCTCAGCGAGCCGGACACCGGGCCGTACCTGCAGCACATCAGCGACAGAGAGGTGCCGGACGATCTGGCTCCCGAGTCCAACCCGTCGGACCACCCTCGGGCCAGCACCATCTTCCTCAGCAAGTCGCAGACGGACGTGAGAGATAAAAGGAAAAGCAACCACATCAACCACGTGTCTCCCGGTCAGCTCACCAAGAAGTACAGCTCCTGCTCCACTATATTTATTGACGACAGCACCGTCAGCCAGCcgaatttaaaaagcacaattaaGTGCGTCACCTTAGCAATATACTACCACATCAAGAACAGGGACTCGGACCGGTCGCTGGACATCTTCGATGAGAAGAAGCACCCGCTGTCGAGAGACGAGGTGCCGGACGATTACTCACGGAACGACCCGGAGCACAAGCACATCTACCGCTTCGTCCGCACGCTGTTCAGCGCCGCGCAGCTCACCGCCGAGTGCGCCATCGTCACGCTGGTGTACCTGGAGCGGCTGCTGACCTACGCCGAGATGGACATCTGCCCCTGCAACTGGAAGCGCATCGTGCTGGGCGCCATCCTGCTGGCCTCCAAGGTGTGGGACGACCAGGCGGTGTGGAACGTGGACTACTGCCAGATCCTGAAGGACATCACGGTGGAGGACATGAACGAGATGGAGAGACACTtcctggagctgctgcagttCAACATCAACGTCCCGGCCAGCGTCTACGCCAAGTACTACTTCGACCTGCGCTCCCTGGCCGACGACAACAACATGAACTTCCCTCTGGAGCCGCTGAGCAAAGAGCGGGCGCAGAGACTGGAGgccatCTGCCGGCTGTGTGAGGACAAGTACAAGGATCTGGGCAAGACGGCCATGAGACGCTCCTTCAGCGCCGACAATCTGGTGGGGATCCGGCGCTCCAACGCCGTGCTGTCCTAG

Function

symbol description
ccnyl1 Predicted to enable cyclin-dependent protein serine/threonine kinase regulator activity. Predicted to be involved in positive regulation of cyclin-dependent protein serine/threonine kinase activity. Predicted to act upstream of or within regulation of cyclin-dependent protein serine/threonine kinase activity. Predicted to be active in cytoplasm and plasma membrane. Orthologous to several human genes including CCNYL1 (cyclin Y like 1).

NR:

description
PREDICTED: cyclin-Y-like protein 1 isoform X2

GO:

id name namespace
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity biological_process
GO:0019901 protein kinase binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000714 True 1029 mRNA 0.60 10 1452612 1463637

Neighbor

gene id symbol gene type direction distance location
AMCG00000713 creb1b,creb1,LOC107663917,LOC107551947 coding upstream 5204 1432992 ~ 1447408 (+)
AMCG00000712 NA coding upstream 30496 1413795 ~ 1422116 (+)
AMCG00000715 NA coding upstream 56642 1395396 ~ 1395970 (+)
AMCG00000704 NA coding upstream 179647 1256781 ~ 1272965 (+)
AMCG00000708 NA coding upstream 203187 1248741 ~ 1249425 (+)
AMCG00000717 NA coding downstream 91041 1554678 ~ 1575439 (+)
AMCG00000722 NA coding downstream 126725 1590362 ~ 1594603 (+)
AMCG00000724 dnajb11 coding downstream 150200 1613837 ~ 1621391 (+)
AMCG00000725 NA coding downstream 174718 1638355 ~ 1644638 (+)
AMCG00000730 LOC107389566,LOC107095702,LOC101072759,LOC105358294 coding downstream 241157 1704794 ~ 1710396 (+)
G125736 NA non-coding upstream 25669 1426633 ~ 1426943 (+)
G125713 NA non-coding upstream 123973 1323503 ~ 1328639 (+)
G125684 myo1b non-coding upstream 145277 1304095 ~ 1307335 (+)
G125613 NA non-coding upstream 855477 596787 ~ 597135 (+)
G125612 NA non-coding upstream 877120 575290 ~ 575492 (+)
G125767 NA non-coding downstream 131186 1594823 ~ 1609210 (+)
G125756 NA non-coding downstream 154171 1617808 ~ 1621888 (+)
G125955 NA non-coding downstream 828198 2291835 ~ 2293872 (+)
G125986 NA non-coding downstream 964033 2427670 ~ 2520585 (+)
G126036 NA non-coding downstream 1094355 2557992 ~ 2558257 (+)
G125561 NA other upstream 1049021 339640 ~ 403591 (+)
AMCG00000723 crygs,LOC107756035,LOC107663530,LOC105911960,LOC103033891 other downstream 136059 1599696 ~ 1606031 (+)
AMCG00000729 satb2,LOC107690605,LOC107569722 other downstream 205208 1668845 ~ 1698573 (+)
AMCG00000734 NA other downstream 341770 1805407 ~ 1814157 (+)
AMCG00000848 NA other downstream 3997664 5461301 ~ 5465981 (+)
G127134 NA other downstream 7153562 8617199 ~ 8620195 (+)

Expression


Co-expression Network