AMCG00000730 (LOC107389566,LOC107095702,LOC101072759,LOC105358294)


Basic Information

Item Value
gene id AMCG00000730
gene name LOC107389566,LOC107095702,LOC101072759,LOC105358294
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 1704794 ~ 1710396 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000730
atggacagaggGACGATTGACTCACCTTTGATCTCTGAGTTCTCTCGTCCCGTCCACATCTTCTCCAGCATCTGTCTGAgcgtttctctccctctttcccgaCAGGCGCTGCTCAGACAGCCCTCCCAGCCCATGAAGGACAGCTCCCCCCTGCGTGAGGACCCCATGCAGCTGGGCCTGCCGGGCTCGGGAGAGGAGATGGGCCTGATGGCTGGAGGCGAGGGCAGCAGGGGCAGCGGTGGGATGGGCATCGGGatgggtggaggaggaggaggaggaggaggaggcggaggcggAGGCGCTGGTAGCAGCAAGAAGCCGCGCTCGCGCACCAAGATCTCCCTGGAGGCGCTGGGGATCCTGCAGAGCTTCATCCACGACGTGGGGCTGTACCCGGACCAGGAGGCCATCCACACGCTGTCTGCCCAGCTGGACCTGCCCAAGCACACCATCATCAAGTTCTTCCAGAACCAGCGCTACCACGTCAAGCACCACGGCAAGCTGAAGGAGCACGGCGGCGCGGGCGGCGTGGACGTGTCCGAGTACCGGGACGAGGAGCTGCTGTCCGGCTCCGAGGACACCGAGTCCAGCGAGGATGGGCCCGAGGATGCGGTGGTGTACGGCGTGGACGCCCcccaccagcaccagcaccagcaccagcaccagcaccagcaccaccaCCCGCACCTCCCTCCCCAGGACGAGGCCAAGGACCGGGGGGGCGGCGCCGGCAACAGCAGCCTCAGCGCCCCCCACCCGGCCCggcccagccccagccccagcgcCTGCTCCAGCGCCAGCTCCGGCTCCGGCTCGGGAGCCCCGCCCCACGGCAACAGGAACCACTCGCCCAGCCCCCCCGACACTGCGGAGCCGCAGCAGCAGAGATAA

Function

NR:

description
PREDICTED: DNA-binding protein SATB2-like isoform X2

GO:

id name namespace
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000730 True 891 mRNA 0.68 2 1704794 1710396

Neighbor

gene id symbol gene type direction distance location
AMCG00000725 NA coding upstream 60156 1638355 ~ 1644638 (+)
AMCG00000724 dnajb11 coding upstream 83403 1613837 ~ 1621391 (+)
AMCG00000722 NA coding upstream 110191 1590362 ~ 1594603 (+)
AMCG00000717 NA coding upstream 129355 1554678 ~ 1575439 (+)
AMCG00000714 ccnyl1,LOC107698526,LOC107733650,LOC107738507,LOC107663902 coding upstream 241157 1452612 ~ 1463637 (+)
AMCG00000738 NA coding downstream 82012 1792408 ~ 1798431 (+)
AMCG00000737 NA coding downstream 114473 1824869 ~ 1830750 (+)
AMCG00000736 NA coding downstream 159183 1869579 ~ 1873692 (+)
AMCG00000735 vps16,LOC101164202,LOC106575790 coding downstream 164602 1874998 ~ 1885085 (+)
AMCG00000733 rpe,LOC106919839,LOC103134215,LOC108239723,LOC101467395,LOC102796346,LOC100692108 coding downstream 175184 1885580 ~ 1889165 (+)
G125756 NA non-coding upstream 82906 1617808 ~ 1621888 (+)
G125767 NA non-coding upstream 95584 1594823 ~ 1609210 (+)
G125736 NA non-coding upstream 277851 1426633 ~ 1426943 (+)
G125713 NA non-coding upstream 376155 1323503 ~ 1328639 (+)
G125684 myo1b non-coding upstream 397459 1304095 ~ 1307335 (+)
G125955 NA non-coding downstream 581439 2291835 ~ 2293872 (+)
G125986 NA non-coding downstream 717274 2427670 ~ 2520585 (+)
G126036 NA non-coding downstream 847596 2557992 ~ 2558257 (+)
G126044 NA non-coding downstream 1055859 2766255 ~ 2766539 (+)
G126050 NA non-coding downstream 1160520 2870916 ~ 2885184 (+)
AMCG00000729 satb2,LOC107690605,LOC107569722 other upstream 6221 1668845 ~ 1698573 (+)
AMCG00000723 crygs,LOC107756035,LOC107663530,LOC105911960,LOC103033891 other upstream 98763 1599696 ~ 1606031 (+)
G125561 NA other upstream 1301203 339640 ~ 403591 (+)
AMCG00000734 NA other downstream 95011 1805407 ~ 1814157 (+)
AMCG00000848 NA other downstream 3750905 5461301 ~ 5465981 (+)
G127134 NA other downstream 6906803 8617199 ~ 8620195 (+)
AMCG00000949 NA other downstream 8389887 10100283 ~ 10154187 (+)
AMCG00001002 myo3b other downstream 10289268 11999664 ~ 12011425 (+)

Expression


Co-expression Network