AMCG00000733 (rpe,LOC106919839,LOC103134215,LOC108239723,LOC101467395,LOC102796346,LOC100692108)


Basic Information

Item Value
gene id AMCG00000733
gene name rpe,LOC106919839,LOC103134215,LOC108239723,LOC101467395,LOC102796346,LOC100692108
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 1885580 ~ 1889165 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000733
GAATGCGGCTGTGTCCCCTAAACCAGGGCTGTCGGCGCCTGCGCACTGGATCTGAGGCCACCTACTCCAGACAGCCCGAGCACAGGCCGGAGCGCAGACAGAAGCCGCACAGAGCCGCAGCTGCCCAGCATGTCGTACACGGCGAAGATCGGCCCGTCCATCCTGAACAGCGACCTGGCCTGCCTGGGGGCCGAGTGCTCCCGCATGCTGGACTGCGGGGCGGATTACCTGCACCTGGACGTCATGGACGGCCATTTCGTCCCGAACATCACCTTCGGCCCCCCCGTGGTGGAGTGTCTGAGGACCCAGCTCGGCCCGCAGCCCTTTTTTGACATGCACATGATGGTGTCCCGGCCGGAGCAGTGGGTGCGGCCCATGGCGGCAGCGGGGGCCAGTCAGTACACCTTCCACCTGGAGGCCACCAGCAACCCTGGGCCCCTCATCAAGGACATCCGAGAGAGTGGCATGAAGGTGGGTCTGGGCATCAAGCCGGGCACCACGGTGGAGGAGCTGGCCCCCTGGGCGGCGCAGATCGACATGGCGCTGGTGATGACCGTGGAGCCTGGGTTCGGGGGGCAGAAGTTCATGGAGGACATGATGCCCAAGGTGAACTGGCTGCGAACTCAGTTCCCCTCTCTGGACATTGAGGTGGACGGTGGCGTGGGGCCGGACAGCATTCACAAGTGTGCGGAGgcCGGGGCGAACATGATCGTGTCGGGCAGCGCCATCATGAAGAGTGCCGACCCCCGCTCCGTCATCTCGCTGCTGCGCGCCGCCTGCGCCGAGGCCATCCAGAAGAGATCGCTGGACCGGTGAGGGCGGCCGCggccctcccccccccacccccgacaaATACACACACGTATGACAACCCTACCGAATCCAGCCCCGTCTAGAAATTGGCCCTCAACGTGGTGGGGGGGTCCTCAGTGCTGGAGTCTGAATACATGGGTACTCCATTCCACCCTCCACCCTCCACCCCCAGGATGTCACACTGGATAATTGTCACTGAGCTCTGCCTCAACCGGGACCCGGCACCGGCACCGACCCAGCCAGAAGAAGAACAACCCCGTTATTACTGCTGTCTCGGATTCAGCTGGgtgtctcctctccctctctctctctcgctctctctctcagcctgcACCAGCTGAAATCTGTCTTCAGCATTAAAAGGTGATTTAGTTTGTCGtcacaattgtattttattttccgaagcttgttttttgttcctgttgttgCTTGTGTGCGGTGCTGAGTGGACCGACCCGACGGCAGGGGATCCAGGTTGTCTCCTCTCGTCTGTTACACATGACAGAGCACACTGGAAGACATTCCTTtaggtttgtagtttgtgtAGTTTGCGCGCTCCTCCCGCCCGCTGCGCCGGGCCTTGGACTGTGCTGTGACGGTTGTGTTTCTTCACGTTTCTCTGTAAACGGGGATCAAGCAGACAGGCGCCTTGCCTGTCGCGGACAATAAAGCCGTGTGTTCGGGCCTCGCTGGTGTGTTGCGTCTGTTGCTCTTCACAGGGTCTACCCGAACACGTGGGCCGTGAGTAGTGTTTCCGGTCTGGTGAGATCTCAGCTGCCGGTCCTGCTGGGGGAAGACcat

Function

symbol description
rpe Predicted to enable metal ion binding activity and ribulose-phosphate 3-epimerase activity. Acts upstream of or within cilium assembly. Predicted to be active in cytosol. Orthologous to several human genes including RPE (ribulose-5-phosphate-3-epimerase).

NR:

description
PREDICTED: ribulose-phosphate 3-epimerase-like

GO:

id name namespace
GO:0006098 pentose-phosphate shunt biological_process
GO:0004750 ribulose-phosphate 3-epimerase activity molecular_function
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K01783 rpe, RPE; ribulose-phosphate 3-epimerase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000733 True 1614 mRNA 0.61 6 1885580 1889165

Neighbor

gene id symbol gene type direction distance location
AMCG00000735 vps16,LOC101164202,LOC106575790 coding upstream 495 1874998 ~ 1885085 (+)
AMCG00000736 NA coding upstream 11888 1869579 ~ 1873692 (+)
AMCG00000737 NA coding upstream 54830 1824869 ~ 1830750 (+)
AMCG00000738 NA coding upstream 87149 1792408 ~ 1798431 (+)
AMCG00000730 LOC107389566,LOC107095702,LOC101072759,LOC105358294 coding upstream 175184 1704794 ~ 1710396 (+)
AMCG00000745 NA coding downstream 54483 1943648 ~ 1945167 (+)
AMCG00000750 NA coding downstream 75866 1965031 ~ 1969537 (+)
AMCG00000748 agap1,LOC108272907 coding downstream 86224 1975389 ~ 1978780 (+)
AMCG00000749 agap1 coding downstream 97923 1987088 ~ 1993395 (+)
AMCG00000747 agap1,LOC106575763,LOC101478076 coding downstream 119597 2008762 ~ 2024346 (+)
G125756 NA non-coding upstream 263692 1617808 ~ 1621888 (+)
G125767 NA non-coding upstream 276370 1594823 ~ 1609210 (+)
G125736 NA non-coding upstream 458637 1426633 ~ 1426943 (+)
G125713 NA non-coding upstream 556941 1323503 ~ 1328639 (+)
G125684 myo1b non-coding upstream 578245 1304095 ~ 1307335 (+)
G125955 NA non-coding downstream 402670 2291835 ~ 2293872 (+)
G125986 NA non-coding downstream 538505 2427670 ~ 2520585 (+)
G126036 NA non-coding downstream 668827 2557992 ~ 2558257 (+)
G126044 NA non-coding downstream 877090 2766255 ~ 2766539 (+)
G126050 NA non-coding downstream 981751 2870916 ~ 2885184 (+)
AMCG00000734 NA other upstream 71423 1805407 ~ 1814157 (+)
AMCG00000729 satb2,LOC107690605,LOC107569722 other upstream 187007 1668845 ~ 1698573 (+)
AMCG00000723 crygs,LOC107756035,LOC107663530,LOC105911960,LOC103033891 other upstream 279549 1599696 ~ 1606031 (+)
G125561 NA other upstream 1481989 339640 ~ 403591 (+)
AMCG00000848 NA other downstream 3572136 5461301 ~ 5465981 (+)
G127134 NA other downstream 6728034 8617199 ~ 8620195 (+)
AMCG00000949 NA other downstream 8211118 10100283 ~ 10154187 (+)
AMCG00001002 myo3b other downstream 10110499 11999664 ~ 12011425 (+)
AMCG00001022 NA other downstream 10399785 12288950 ~ 12385042 (+)

Expression


Co-expression Network