AMCG00000734


Basic Information

Item Value
gene id AMCG00000734
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 1805407 ~ 1814157 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000734
ATGGATGCGCCTGCCACCCACCACTGCTCAGACGCCGGGCTCTTGAGTGGCTGCTTTTCACAGGAACCCGGTCAGTGTGAAGGGGTCACGGGGTCACGGCAGTGGGGCGAAGAGGCCCGGGAGAAGCCGTGTCCGGCCCCGGCCCTCGCCCCACACGGGGGCCCCAGTCAGGGCAGGGCTGAGTGTGTCGTTGGCCAGGAGGAAGTGGAGGGAGGGGTATCTGAGgaGCGCAGACAGACTGGCATCTGACGGGCTGGTTCTGGAGGCGCCCGCTCTGATCAAAGTTTACTTTTGCGTATATTTGTAATAGCGTTACAATATTACTATAAATGCTTGTTATTATTAGACTATTTTAAAACGAAGAAAGCAGCGGACTGATTGATGGAGGATTAAAAACACTGGGAGACGCAGCAGCTTTTGCACTTCCCTTTTGTGGGCTATTTTAAGCGTCTTTCTCCCGGTCGGGGCGGACTGACGTGGCCGGGGCACCAGTACGTTTTCTGCCCAGTTGTGCTCAACCCACCCTGCGGCTCtacgcctctctctctccgggcCGTGTGTGAGCAATCTGCCGAGGCATCCGCGGATTACAGACCCGTTACTGTATCCCCTCCCGAGCCCGAGGGGGCACTCCGGCCCCGGGCGCGGGATGCTCAGGGCGCCGCGCTAGCCTCCGGGACGCACCCGTGTCCGGCCGGCCTGCGCTGCGATGGGCTGCGGGCTGAGGAAGCTGGAGGAGCCGGAGGACAGCAGCCCCGGCAAGATCTACTCCACCCTGAAGAGAGCGCAAGTGGAGACCCGCACCGACACGGCGTACGAGTATCTGCTGCTGGACTTCAGCCTGGAGGGCTGCAGTTGCccgtcagtgcagtgtgtgagctCCCTGACCGAGCTGCCCCAGGCCCTGCAGAGCCACTACAGGGAGGGCTTCCAGCTGGCCGCCCTGCACCCCGTCATCCTGTCCGTGGGCCGGTCCCGCCCGCTGCCCCTCAGCCTGCTGTACCGCGCGGTGCTGTCCCGGCCCCGGTACAGTAAGCAGGCTGCCCCAGTGGCTCAAAGCACGCCCCGGCTGTGGGTGGAGGAGTGGCCGCTGCCCGGAGACACCCTGACCAGTGACAGCGTGAGAGCTCTTATCGACAGGgtgAACGCCAATTCTCAGGGGGGGGTGCGGTTCGTGTGCTCAGTGCTGCAGCAGGGAGGCGGGGGGCCACGGAGCTGTAACGGGGGGCTGCCCAGCTCGCGGGGAGGTAGCAGCCGGAGCCCCCCAAGCAGCCGCGCAGGCGAAGGAGGGATGGAGGAGGACGGCACAGCGCGCAGTCAGgATCTGCGGCTCTTGGTGCTGTTCCACTCCTGGCCCCCCGGCTCCCCCGCCCCGGCGGCCCTGCCCTGCTCCTACCACCAGGGGGCTCTGTCCATGCGGGTGTCGCGCAAGGGCCAGGCGGTCTGCGCGCTGGAGGCCGATTGGCTGGAGCTGACGGCCGCCTACTACCGCAAGGGCTGGTCATTGGTCGACTCCTTCGTGTACTGGGACACGCCCAGAGGGGAGCCCGTGCCGCGCTCTCTGGAGGGGCTGTTTGTGTACGAGGAGCCCTGCCCCGGCCCCGGAGCCCCCCCGGCCAACGACACCATCGTGGTGGAGCAGTGGACGGTGATCGAGGGCTCGGAGGTGAAGGCGGACTACGGCCCCCTGGTCCACACGCTGGCGGAGTTCGGCTGGCTGCTCACCTGTGTGCTGCCCACGCCGATCATCAGACACGACAGtGAGGGCAATCTGGCCACCAAGCAAGTGGTGTTCCTCCAGAGGCCCGTCAGAACCCCCGAGCCGGCGCAGCGGCGAACAGAGGCTGGCTCTCAGTGCAGTGAGGTGTCAAAGCGCTCGGTGAGCAGGGGAGTGGGGGTGTCCCTGGCTGATGACCTGTCTCCc
>TU157676
cagtGAGGGCAATCTGGCCACCAAGCAAGTGGTGTTCCTCCAGAGGCCCGTCAGAACCCCCGAGCCGGCGCAGCGGCGAACAGAGGCTGGCTCTCAGTGCAGTGAGGTGTCAAAGCGCTCGGTGAGCAGGGGAGTGGGGGTGTCCCTGGCTGATGACCTGTCTCCctgtggggggggtgtgggggcaTTCCCGGGGTTCGGAGGGGGATACCCCAGCGCCCTCACCGACCTGGAGGAGGGGGGCTTCGAGCAGGACGAGGGGGCTGCGCAGGTCACCTGTATGTGAGAGACGACcgactgacactgacacacactcacacactgactgactgactgactgacacacacaatgacagaaGCACCGCCCTGAACAGAGACCCTAACACCCCCTCCGCACTGGGACCCCTGCCTGTCCCGGCCCCCTCAGTGAGGCAGCGCAGACCCCCAGAgaccccctctctctgtggaCAGGAACCACCCTGACGCCCAGCGGCTCCCCACGGAGACAGTTCTTACGACTTAACTCATTCAATTCGCATCCTGGAatggagtggggtggggggggacagtATCATTAGAAACATCCCACCCCCCAACAGACTCAGCACTACGGGACCCCCAGAGGCACAGACTGGGAGACACGGACATTAAGCTCCCCCCCACACTGGCTCAGCCGCAGGCAGCGGGGCGGACAGGTGTAACCCGCCGGCCCGTCCACTCCAGGACCCCCAGGGCAACACGGGCGGCTCCTCGGGTTCCACTTCGAGGCTTCTGTCCCGCCCCCCAGACGGACTGTCTCGCTGGGCCCGGGTCTCCGAGCCTCTGGACCTCAAGGCAGAACCCAGCTTTTCCCAAACCGTCAGGGGGACTTCTTGtggtttgatttttcttcttgtatttTATCAGAATCCTggataattgtgttttttaaatctgtattttatttttaacagcacGGAGAcggagaaagcgagagagaggctCTGATGACCGGCCCTGCTGATGTCAGTGAGTGACAGCTCAGTGGCTGTGAGGGGCGgcacagttgttgttgttggtatttttgtatgttCCAGTATTGTCTGTTCATTTTTGCACATCATACGCAGAGCAGCGCTCACACACGcaccagcccccccacccccacccccacccccaccccaaaagCCTGTACCACGTCCCTCGAACCCACGGCTCAAACACCATTACACATCTGCATTTTGAATTGCGTCAGTTACCGTTTGAAATTTGGAATTGAAAAATGACTAACTGTGTCCTGTTTgatgatttgaaaatataaccTCATCTGTACATCACAACAACATAAACACAGTGTAAGATTAAAGGCACAACAATCCCAACCAGAAGAGTGGGAGACAAATATGCGGTTGAATAttgcaaatatgcaaatatccTGCATCTCAATGAGGGGAGGAGATGAGACCAAGAAAGATAGACGGGTTTGTTATTCAAAGTGGAGCTCCTGCGTGTCCTGCTAGAAACATAtctccctgacacacacacagtcagcgCTCGTTATAATACTGTGAACGGTTTAACTACACCAATGAGAAGGCAGACACTGCAAGGCAACACTTCAGTTCAGTTGTAGACCATCTTTGTTGTCGTGCCGAGTTTGTCGAGATATTCCAAtgagattgtattttcaaacacaaatcataaattgaaatacaaatgatgGAAAATACAGAACATCAAACACTTGTGAAAGTACATATTTGAGTAATAGTAACTGGTGATCGTGAAACAGGACGCAACTGTAGATTTGTAAGATAAGATTTTGGAAAAGTCACcagaaatacagacatttttctAAAATCGTGAGTTTCAAAGTGTCggatttaaattgcattagAAACAGAGCAGGAATCCCCgcgttttgtattttataaatactgTCATCTTAATttttgtatacacacacacacactacacagacCCGCTGAGTGACTCATACCTGAGCAGTATTGATCACAGCCGAGATGCAGGGACTGTTTCACACGGCTGGTTGGGGGTTTTTGtggttatttttaacttttttaaataaaagaaacctCTGTTGAATTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000734 False 1924 mRNA 0.66 10 1805407 1812234
TU157676 True 2089 lncRNA 0.51 2 1811683 1814157

Neighbor

gene id symbol gene type direction distance location
AMCG00000738 NA coding upstream 6976 1792408 ~ 1798431 (+)
AMCG00000730 LOC107389566,LOC107095702,LOC101072759,LOC105358294 coding upstream 95011 1704794 ~ 1710396 (+)
AMCG00000725 NA coding upstream 160769 1638355 ~ 1644638 (+)
AMCG00000724 dnajb11 coding upstream 184016 1613837 ~ 1621391 (+)
AMCG00000722 NA coding upstream 210804 1590362 ~ 1594603 (+)
AMCG00000737 NA coding downstream 10712 1824869 ~ 1830750 (+)
AMCG00000736 NA coding downstream 55422 1869579 ~ 1873692 (+)
AMCG00000735 vps16,LOC101164202,LOC106575790 coding downstream 60841 1874998 ~ 1885085 (+)
AMCG00000733 rpe,LOC106919839,LOC103134215,LOC108239723,LOC101467395,LOC102796346,LOC100692108 coding downstream 71423 1885580 ~ 1889165 (+)
AMCG00000745 NA coding downstream 129491 1943648 ~ 1945167 (+)
G125756 NA non-coding upstream 183519 1617808 ~ 1621888 (+)
G125767 NA non-coding upstream 196197 1594823 ~ 1609210 (+)
G125736 NA non-coding upstream 378464 1426633 ~ 1426943 (+)
G125713 NA non-coding upstream 476768 1323503 ~ 1328639 (+)
G125684 myo1b non-coding upstream 498072 1304095 ~ 1307335 (+)
G125955 NA non-coding downstream 477678 2291835 ~ 2293872 (+)
G125986 NA non-coding downstream 613513 2427670 ~ 2520585 (+)
G126036 NA non-coding downstream 743835 2557992 ~ 2558257 (+)
G126044 NA non-coding downstream 952098 2766255 ~ 2766539 (+)
G126050 NA non-coding downstream 1056759 2870916 ~ 2885184 (+)
AMCG00000729 satb2,LOC107690605,LOC107569722 other upstream 106834 1668845 ~ 1698573 (+)
AMCG00000723 crygs,LOC107756035,LOC107663530,LOC105911960,LOC103033891 other upstream 199376 1599696 ~ 1606031 (+)
G125561 NA other upstream 1401816 339640 ~ 403591 (+)
AMCG00000848 NA other downstream 3647144 5461301 ~ 5465981 (+)
G127134 NA other downstream 6803042 8617199 ~ 8620195 (+)
AMCG00000949 NA other downstream 8286126 10100283 ~ 10154187 (+)
AMCG00001002 myo3b other downstream 10185507 11999664 ~ 12011425 (+)
AMCG00001022 NA other downstream 10474793 12288950 ~ 12385042 (+)

Expression


Co-expression Network