AMCG00000735 (vps16,LOC101164202,LOC106575790)


Basic Information

Item Value
gene id AMCG00000735
gene name vps16,LOC101164202,LOC106575790
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 1874998 ~ 1885085 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000735
AGCGAATCAATTGCAGGCGTCGGGTCTCTTGCGCGGTGCGTGTCTGTCCCACAACACGGACGGTGGCGCATCCCACCATGCTTTGCGAGCGGCTGGGCGGAAGAGCTCGCCGTGTGACCGGCTGAAGGCAGGAAGGGGAAACGAGCggagcacaacaacaacaccgacagacagacagacagacagacagactgcagTCAGCACCCCGGTTCAGTGGAGGAGAGTGGGAGGAGCAGCGGCAACCATGGCGTTTGTGACGGCGAACTGGAACCCGCTGGGAGAGGCGTTTTACAGGAAGGTCGAGCTGTACGAGATGGGCTGGAGCCTGAGGGAGGGCCTGAGGGACTGTCTGATCGCCACAGCGCCGTACGCGGGTCCCATCGccctgtTGCGGCCGCCGCAGCACCGCTCCCCCAGCGCCCGGCCACAGTTAGAGATCTACTCCTCCTCCGGCTCCAGCCTGGCCAGCTTTCCGtggaAGAGCGGCTCAGTGGTCACGCTGGGCTGGACGGTGACTGATGacctgctgtgtgtgcaggaggACGGCACGGTGCTGCTGTACGACCTGTTCGGCGGCTTCAAGAGGCACTTCAGCATGGGCAACGAAGTCCTTCAGAACCACGTGATTGAAGCCAAGGTGTTCCACTCGCCCTACGGCACGGGGGTCGCCATCGTGACGGGGGCGTCCCGGTTCACCCTCGCAACCAACATCGACGACCTCAAACTGCGCCGACTCCCTGAGGTCCCAGGCCTGCAGGGGGCGCCCCTGTGCTGGGCGGTGCTCACTCAGGACAGACAGACCAAGGTGCTGCTGGCCACCGGCAGAGAGCTCTACATCCTGGACAACACGGCCTGCACCGCCCTGCACCTGGCTCTATTCACCGACACCGGGCTCGTGTGGATGGGCACGGCCAGCCTGAAGGAGAAGCTCGGAGAGGTGGACACCAAGGTGCGTCCCGCCCCCAAGCAGATGGtctgGTGTCGCCGGCCCAAGAGCCGACAGCCCTCTGTGGTGCTGATTTGGGACCGGCTCCTCCTTGTGGCCGGGGAGTGCAACGACACCATCCAGACCCCCCAGCTCTCCGCACTGTCCCGGGTTCTGTCCTTGACCCGCGATGCAGTGGCCTGTGAGGAGATATTCAAGATTGCCTCCATGGCTCCTGGGGCCCTGCTGCTCGAGGCGCACAAGGAGTATGAGAAGGAGAGCCAGAAGGCGGACGAGTACCTGCGGGAGATCAAGGAGCAGAGCCTGCTGGGAGAGGCGGTCCGGCAGTGTGTGGAGGCGGCCGGCTACGAGCAGGAGCCCGAGACCCAGAAGACACTGCTGCGGgcGGCGTCCTTTGGGAAGTGCTTCCTCAGTAATTTCCCCCCTGAcctgtttgtcagtgtgtgtcggGACCTGCGTGTGCTGAACGCCGTGAGGGACTACACTGTGGGcctcccactcacacacacacaGTATAAGCAGCTGACTGTGCAGGTGCTCATCGACAGGCTGGTGTACCGCCGGCTCTACCCTCTGGCCATCGAGATCTGCCGCTACCTGAAGATCCCAGAGTACCAGGGCGTCAGCAGGGTCCTCAAACACTGGGCCTGCCACAAGGTCCAGCAGAAGGAGGAGCCGGATGATGTCATCGCCCGGGCTGTCAATCAGAAGCTGGGCGAGGCTGTGGGCATCTCGTACTCGGAGATCGCGGCACGGGCGTACGACTGTGGCCGCACTGAGCTCGCCATCAAGctGCTGGAGTTCGAGCCGCGCTCAGGGGAGCAGGTCCCTCTGCTGCTGAAGATGAAGAGAAGCCACCTGGCCCTGAGCAAAGCCATCGAGAGCGGAGACACCGACCTGGTGTACACTGTGGTCTCCTATCTGAAAAACGAAATGAACAGAGGAGATTTCTTCATGACCCTGAGGAACCAGCCAGTGGCTCTGAGCCTCTATAGACAGTTCTGTAAGCACCAGGAGCAGGACACCCTGAAGGACCTGTTCAACCAGGACGACGACCACCAGGAGCTCGGCAACTTCTACGTCCGAGCCAGCTACCGAGAGGGGAAGCTGGAGGCGCGCCTGTCCGCCCTGCAGAGCGCCGTGGACGAGTACAACAAGGCCAAGAACGAGTTCGCCGCCAAGGTAAGAGCTGAGCTGCACCGGGAGCCGTGGTCCCTGTGTCCAGAGGACTGGGCAGGGATGGAGGAACTCggagcctctctctctctcaatattaATCATGTAATGTCTTTCAGGAGAcagCGCcggcaggaggaggagagcggCCAGTCCATGATGGACCTGTCTCTGCAGGACACGCTGCACAGCCTGCTGCTCCAGGGCCGCGGCCGGCAGGCCGAGCAGCTGTACAAGGAGTTCCGCATCCCGGACAAGAGGTACTGGTGGCAGAAGCTGTCAGCGTTGTCGGAGAAGGAGGACtgggaggagctggagaaatTCTCCAAGAGCAAGAAGTCTCCCATTGGATACCTGcCCTTCGTGGAGGTCTGTGTGAAGCACCACAACAAGTACGAGGCCAAGAAGTACGTGTCCAAGGTGACGCCGGAGCAGAAGGTGAAGGCGCACCTGGCCGTAGGGGACGTGGAGGGCGCGGCGGAGGCGGCGATCGAGCGGCGCAGCGAGGGGGAGCTGAGCCTGGTGCTGTCCCACTGCTCCCCCACCACCGACCGTGGCCTGGTGGAGCGGCTGAACCGCGCCCGCACTGCCGCCAGCAAGAAAtaaaccccccacacacacgcagCCGAGACAGAGACACACCCTTCGGTGGGAAACCCCACTCCCACACTCTGACTCCCGGGAAGATGTCCGCTGCGGGGATGGGCTGCCCTCCTGTCCTCCGGCTGCTTCTCTGTACATTACTGTTGTTGATATAGTGTTAATATGAGAGTGCTGTGGCCTTATTTAACGCATCATCGTTATTTACTACCATTACTACTAATAAACTCTCTTTAAGCTGACAGAAGTGTTGTTGCTACATTCTGACAAGGCCTGTCACAGCTTTACAGACAGACGAAACTGTCAAGCAGGTTGCttggcctgtttttttttttttacccgaTATGCAAAATGCTTTATAACAGATGGAAACATTACAGGGCACAGTTGTGGGTTTATTGAGGCACCGACAGATTGACACCAGTGaaggagacaaaaataaaacatcagacGAGGAAAGAGTAATTTGTTTCTATagagggcagcagtgtggggtTATGGTCAGGAGCtcagggttgtgggttcagtcccaggctGCGGACTTGAGAAAGA

Function

symbol description
vps16 Predicted to enable actin binding activity. Predicted to be involved in endosomal transport and vacuole fusion, non-autophagic. Predicted to act upstream of or within intracellular protein transport and vacuole organization. Predicted to be located in early endosome; late endosome membrane; and lysosomal membrane. Predicted to be part of HOPS complex. Predicted to be active in endosome. Human ortholog(s) of this gene implicated in dystonia. Orthologous to human VPS16 (VPS16 core subunit of CORVET and HOPS complexes).

NR:

description
vacuolar protein sorting 16-like, partial

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K20180 VPS16; vacuolar protein sorting-associated protein 16

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000735 True 3274 mRNA 0.60 24 1874998 1885085

Neighbor

gene id symbol gene type direction distance location
AMCG00000736 NA coding upstream 1306 1869579 ~ 1873692 (+)
AMCG00000737 NA coding upstream 44248 1824869 ~ 1830750 (+)
AMCG00000738 NA coding upstream 76567 1792408 ~ 1798431 (+)
AMCG00000730 LOC107389566,LOC107095702,LOC101072759,LOC105358294 coding upstream 164602 1704794 ~ 1710396 (+)
AMCG00000725 NA coding upstream 230360 1638355 ~ 1644638 (+)
AMCG00000733 rpe,LOC106919839,LOC103134215,LOC108239723,LOC101467395,LOC102796346,LOC100692108 coding downstream 495 1885580 ~ 1889165 (+)
AMCG00000745 NA coding downstream 58563 1943648 ~ 1945167 (+)
AMCG00000750 NA coding downstream 79946 1965031 ~ 1969537 (+)
AMCG00000748 agap1,LOC108272907 coding downstream 90304 1975389 ~ 1978780 (+)
AMCG00000749 agap1 coding downstream 102003 1987088 ~ 1993395 (+)
G125756 NA non-coding upstream 253110 1617808 ~ 1621888 (+)
G125767 NA non-coding upstream 265788 1594823 ~ 1609210 (+)
G125736 NA non-coding upstream 448055 1426633 ~ 1426943 (+)
G125713 NA non-coding upstream 546359 1323503 ~ 1328639 (+)
G125684 myo1b non-coding upstream 567663 1304095 ~ 1307335 (+)
G125955 NA non-coding downstream 406750 2291835 ~ 2293872 (+)
G125986 NA non-coding downstream 542585 2427670 ~ 2520585 (+)
G126036 NA non-coding downstream 672907 2557992 ~ 2558257 (+)
G126044 NA non-coding downstream 881170 2766255 ~ 2766539 (+)
G126050 NA non-coding downstream 985831 2870916 ~ 2885184 (+)
AMCG00000734 NA other upstream 60841 1805407 ~ 1814157 (+)
AMCG00000729 satb2,LOC107690605,LOC107569722 other upstream 176425 1668845 ~ 1698573 (+)
AMCG00000723 crygs,LOC107756035,LOC107663530,LOC105911960,LOC103033891 other upstream 268967 1599696 ~ 1606031 (+)
G125561 NA other upstream 1471407 339640 ~ 403591 (+)
AMCG00000848 NA other downstream 3576216 5461301 ~ 5465981 (+)
G127134 NA other downstream 6732114 8617199 ~ 8620195 (+)
AMCG00000949 NA other downstream 8215198 10100283 ~ 10154187 (+)
AMCG00001002 myo3b other downstream 10114579 11999664 ~ 12011425 (+)
AMCG00001022 NA other downstream 10403865 12288950 ~ 12385042 (+)

Expression


Co-expression Network