AMCG00000760 (LOC106581656)


Basic Information

Item Value
gene id AMCG00000760
gene name LOC106581656
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 2423045 ~ 2462484 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000760
ATGGGAAACGACTGCTTCCGCGCGGAGGGGGACTGTGATTCGGCAGAGCTGAGTAACCCCTGGGAACGAGATGCTCAGTTCTGCAGCAGGTCCAGTCTGCCGCAAGGCGTGGCCCCGGCAGTTAAACGAACTGTTACCTACAAGCGGTGCCTGCCCAGGAGCGGAATCAAGATTAGGACGATCTTCATTTCTCTGCATgCAGAGGCGAGGCTGGCAGCGAAGAGGGCAGCCAGAGCCGAAGCACGGGAGATCAGGATGAAGGAGCTGGAGAGGCAGCAGAAAGAGAAATACTACGGGCTGGACAACAAATGGGGTGATATCGAGCAGTGGATGATCTCAGACGATGATGAACGGATGTCCGTGGGCAGCCGCGGCAGCCTGAGGGGGAATTACTGCTCCTCTGACCtgttcagcagcagcagcctgtcCTCCTCCAAGCTGCAGTCCTCCGCGCAGAACGGCACTCGGCCCTCAGAGTACAGCGGCTTTCTGGGGTCCAACTCCCGTGCCTCCTCCCGGGCCAGTTCTGCCCGCGCCAGCCCCGTGTGTGCGAATGACGGCGGCTCGGTGGCCGGGTTTCTGCGCAGCGCGGCGAGCAGCAGCGTCCTGGGCGACCTGGACGACGTCACCATCCCCGACCTGCCAGACGTGGAGGAGAGATCAGACAAGGACTTTTTGGAAAAGGGGACTCGAACTGCCTCCACCCTGTCAGCTGCTACCCTCGCCTCCCTGGGCGGGATATCCTCTCGGAGAGGGAGTGGGGACACCTCAGTTTCTGCCGATACGGAAGCATCCATTCGAGAGATTAAGGACATTAATGAGCTGAAGGATCAGATTCAAGATGTGGAAAGCAAATATATGCAGGGTCTCAAAGAAGTCAAGGACTCTCTGGCTGAGGTGGAGGAGAAATACAGGAAGGCGATGGTTTCCAACGCCCAGCTGGACAACGAGAAGTCTAACCTGATGTACCAGGTGGACACGCTGAAGGACTCGCTGATGGAACTGGAGGAACAGCTGTCCGAGTCTCGGCGAGAGTACGAGGAGAAGGCCAAGGAttatgaaagagagagacacgcCCACAGTGTGCTCCAGTTCCAGTTTAATGAGATGAAAGAGACCCTTCGACAAAGTGAAGAATTGTTAACTGAGATCCGCCAGCTGCATCTGAAGCAGGATGGCTATGTTAGGGAGATCTCTGATCTGCAGGAAACCCTGGAGTGGAAGGATAAAAAGATAGGGGCCTTAGAAAGGCAGAAGGAGTATTCCGACGCCATCCGTAATGAGCGTGATGAACTCCGTGATGAGGTGGTCGTGCTGAAGGACGTACTGAAGAAACACGGCATAGTCCTGGGCCCGGACCTGCCTGCTAACGGGGACGTGGGCGATGGTGTGAACGACGCAGACTCCTCCACGCGCTCGGCTCAGGACTCGATTCGCACGTCACACTCGACCGGGGACGGGCTGCTGGGCAGAGTCAAGGAGGtgcagaaggaaaataaacatgtgGAGGATGTTGGAAATAAAGAGATCTTGGAGAAGGCTGAGAACAATACTGAGGGGCAGCAGGAGGAGGCAGAATCAGAGGAGGGGAGTGGTGGCGAAAAGATGCAAGGGATCCAGGGTGCGGACAAACTGTCATCGCCAGCTCCCTGTGGCGACCTTCTTAATAACCTAGAAGAACAGAGCCACACTGCCAGTATACCCACCCCAGAGAACGCAGAGAAAACACAGTCTCACTTGCCCTTGGGCAGTGATGAAGACACCCGGGACTCGGTAACAGATCAACATGACACAGACAATGACATTACCAAGGTCATGCCAGAGCCACTAGGGGTTAGCTTAGTCTGTGACAGTACAGGGGACGCTAACTTAGTAGCGGAGAGAGAGGGTAAGAGAGACGCTGTTACTGAAATGGGTAATGCAGAGGTGCAGGTGACAATAACAGCGCCTGAAGAAGAGGGAACTGGAGAGCAGAGGTCCTCCAGTGAGGGCGATGAAAGCTCAGAAGAGCGGGTGGTCAGCAGTGAGACCGGTGGTCAGACTGGAGACAGCGTAGATGCAAAAGGGGAGGAAAGTAAAGCTCTAAGCTTAGATTCAGGCGGTGACGGGTCTAGTTCAGCAGAAGCAGATGAGACAAGCACAGGCACTGAGGAAAAGGCAGAGGGCAAAAGGGCTGCAGACATTGAAACCAAGATACAAGCTCCAAGTGAGATTGTAGGGGAGAGCCCAGAGTTGAGCTTTGGAGAGAATTGCACGGAGAATGAAACACAGGATCTAGAAAATGAAGGTTTGGTTTCTGGGGTGGAAAGTGTCGAGAGCAAAGACTCAACAGGTGACGGTTCAGGTCAGGTAGAAGAAACAGTCAGTGTCAGCGAGAGTGCAAAACTAATTATCGATGCTGTAAAAGAGGACGGCCAGGAAAGTGATTCTGAGGGCGAGGAGGAAACTGATAGCCAGGATACAGATTCCATGAAATCAGTGGAGGAAAACGTCGAACCAGTCAGAGACAGCACCGTGCTGTCTGCCAGGAGAGAAGGTAGCGAACAAGAGTCTCAGGACCTCGCAGTGGGCCAACCAGAGGATGGTTGTTGTGATCGTGAAGCCAGTGGCAGTGAGGAGAAGGTAGCTGAGGTTTTAAGTGATCAGGAAGGGAGGGTTCAAGAACCCAAGCTTGTTTCCACGGAGGCAGAGGTAGAAGGAGAAAGTGCTCTGTCGGTCGTTATAGTGACCCCAGCTCTGTTGCTCATTCAGAATGACCCCGAGAGCAGAGATGAAAGTGAAGATGTCTCATCAGAGAGGCCTCATGGGTCATCAGAGGCTCAGTGCCCTGATGATCCAGGCAGGGAGACTGTAGAGAGAACAGCCAAGGTGAGTGAAGGTGAGAGTGAGGTGAAGGCAAAGGAGGGAGACCAGGATCTTGAGGCTGAAACTGAAGGGAAACCAGAGGAAGCTAAAAGCAATGAGGAGGACAACATCATCCAGGAGGCAGATGCAGAGGAAATGGAAGAAGACAAGAAGGTTGACGGTTCCTTAACGGCCGTGGGagtggagaaggagaagatACCTGACACAGTGCACAAACATGAAGAAGAACATGAAGGCCAATCAGAGACTGAGTGTGAGGTAAAGGAGCCCAGAGATCAGCAGGAGGATGAGAAAGCCCAGATGTCCACAGCTGTACCTGAAGAGGAAAATCCTACAGGTGACCAGAGGGAGAAAAAGGAACCTGTTGAAAGGAGTGAGTTAAAAACAGATGAGAGGGACATCTTTGAAGACTGCCTTCAATCCATAGTAATTAAGGCTGTGCTCAAAGGTGAAGATGAAAAGAATGCATCAGACACCAGCCCACAGGAAGAGACCCAGGTGTGTGAAGATGCTTCAGAGCCTCAATTGGAAAATGCTGTGTTAAAAAATGAACCTGAACTTGACCCCCAGGATAATccagatacaaacacacaccccgACAAATTAGACACAGCTCCAGAAGAAGGAGCATATACCAGTGATGTCCCAGAAGAGGTCCTCATGGAAACAGGTGTTACAAAAAGTAGTGTTGAGGCAGAGAAGGAAGAAAGTGACCAGAAACCTTTGGGTGTTCCAGAACACGCATCGAAAGGAATGCCTGAGGAGACTTCTGAAAACGCTGACATGCAACTTGCAGAAAGAACAGAGGTGGAAGAAAGTGAAGTTGGGGCAAAGACTGAAGCACAAGTCGAAGGTGATGGATTAGCAGCTGATGAATCAGTAATCACCATGGAAGAGCAGTGGCCAGCTGAGGAAACAGAGGAGCATCAGAGGGACACCGGGGAAAAAACTGAGGCACTGATTAAAGAACAGTTAGAGGACATGCCAAAAGAGGATGTCAAAGATGGTAAATCATCGTTCGAGGAGAAAGAGGTGCAGATCAGTGAGGTTTCAGAAGAAATTATGTTGTCAGAAGTAGCTGGTGTTCAGCAAATGGTTAGCGATGGCTCCCAGGATGTCCCCTCAGATGGAACAAGTGACCAAGAACCTGTCACAGTCTTGGATGAACCTGCTGCACCAGATTCAAACAAAGATAAAGGGAATTCAAACAATGATAAAGGGAGTGAAGGCCAGAGTCCCGAACACCAAGCCCAGACAGAAGTCCAGGAAGGAACTGTCACAGTCAAGAGTCAAGAGAAGGATAAAGCAGGAGACTCCACTGAAATGCAGGTTGCCGCACAGACTGATGTCAAGACAGTGGATGATGCGTCTGAAAAAGAGCAAGAACATTCCAGAGAAGAGAAGGATGAACCTCCGATTCAGCccaagaatgaaaaagaaacagcagacaaagaggaggaggatgaagaagaagaggaggatggagaCTCGTTTGAGTTTGACGATGAATCAGGGCAGGATTTTGAGGCGTCAATGGAAGTCCTTCCAGAAAATCAGACCAAGGAAGGACAAACAGCTGCCACAGCCACCACAGCTGAGCAGAGTGTGAAAGAGGGGGAAGCAAATCTGGAGGCCAACAGCGTTAGTCAAGATAAAACATCAGAACATGCAGAGTCTAACACAACAGATGCCCAAGAACCATCAGAAACTCAAAAACAAGAACCTGAGCAGAAAAATGGGGAGGAGGAGAGTTCTCCTGTGGAACAAGCAGAACATGTGAAAGGCTTAGAGGGGAGTGAGCAGGAACAGAGCGAGTCTAACCAGGGGGACAGCCGAGTTGAGGAAGGAAAAGAGGCAAGCAGAGAGGTGGAGGAATCAGAGAGTCAGGGTGAAGGCAGTGAGAGCCCAGGGGTTAGAGAAGAGAGCAAGGAAAGCACACCTGAGGGCAGTGAAGACCTTGGCAAGGCAGACTCAGAGATTCGACTGAGGAAGCTGgtggatgagagagagagtctggtAGAACAGGTCAAGAAGCTGAAGGCACAGATCGAGGACAAGCCGAAGACCAGGACAGGGGACAGCGACGGCACCCCGGAGCCAGTCCTGCAGAACGGCACAGACCTGCACGTCCTGGACTTACAGAGTAAGATTCCCTCAGTCCCTGACGATACTTTCCCAGGAGATGCCAACAGACAAATCAGTGACCTTAAGTTTAAACTGGTCAAATCGGAACAGGAAGTAACGGCTTTGGAGCAAAACgtAACGAGATTGGAAGGCCAAGTTTTGCGCTACAAGTCTGCTTCTGAGAATGCCGAAAAAGTAGAGGATGATCTTAAAGCGGAGAAACGCAAGCTGCAGAGAGAGctcCGTTCTGCACTGGATAAAATCGACGAGTTGGAAGTCAGCAACAGCCACCTGGTGAAGCGTCTGGACAAGATGAAAGCCAACCGCAGCGCGCTGCTGTCCCAGCAATAAGGACCACCCTGTCCGAGCCCTACGGACGCCTGAACATCCGAAATGACATTCGCGTTCGCAGCTCAGTGTGTAACGatcaccataaaaaaaaatagactaaatgaaacaaaaaaacacacaaagatatGAAAACCTAGAGAAACTCTAAGATTAACtatacaaatgcacacatgcacTACGTGCCACTTCATACCATGGTATTTAggtcaataaatacatacattaataaataccaAGTAGCAACCCCAGCAGTATATGAAGATACTCTGGGTGGCAGGTTATCTTTGTGCCTCGCTTCTTTTTCTACATCGCATTCAGGTCAGGTCAGGATTGTGGACGGATGTCACTGGGGTAGGGAAACCCCAAGACTGGCGCTCAGGGGTGCCGGTGGCTGGCAGCTCCTGGGGGCCTCAGTTCTGTGCTTCGCTAGAAGGACAGGAGGATTCGCTAGCGGAGCAGTGTGTGGGGATGTGTTCGCTTGAAATGAACAGTCTACATATCATCCTTTAGCTCTCTACTGCCCCTTCAGAACTGCTCCAGGTGTTGGCAGTGTGCCTTCCTGAGCCGGACGCCCTTCCCTCTGCCCTGCCGATGGCCCCGTCTCACCCACTGCACAGTTATTAACATGTCTTTTCTGGGTGACGTTCGGTGCTGTAGATGCAGGAAGCCTCTGCGCTGTGGGCATGTAGGTCGCTCTGTCCCCTACAGCCATGCGGTGTCCGTGAAGGACAGAGAAAGATGGGGAAACCATGACTGGATCTAGTGGAGATTATTTTGGTctgtgtcccccccccccccaaggatggcattttcttcttttgaatgTTTGTCATGAGAGCAAACGACGAACTCCGCACCTCTCTTTTCAGTCCGCCAAACTGTGtgatctttattattttgttttgttttgtgttgtgatgttgttttgttacattcaTCTGATAAAAAGGTCACAGCCTGTGTAGTCAATGGATGGACGGatgaatggatgaatggatggatagatgtAGGTGAACAATGGCAGGTTCTGGGCCTTCCACTGACCACCAGCTATTTTCCAGATCTTTATTTTTGACACAGACATTATATCACAGCCATCACCATGGAAGATATATCCGCACTCGCGATTTCACCAGCTTTTAATGTCAGAAGATTGTGTCTTTACCAAAAGAAAACACGTTACTCTTGTCCTGCTATTTTGTAAGAAGATATCTGAGATAAACTGCAATAATACTGACTTCTAGCAGAAGGTATTGGTTCTTGCAAAAACACTACGCTGAATTCGACAGCCTGATGCAGATCTGGAGGCGCATTGGACGCATTCCCTCTCCCGGCGCAAAGTAGTTCGCATTATTGTAGCCCTCGaagaaagacacaaagacaaGATGGTAAGACAGACGGGTCGGTGCTGTGAGTGCGGGGAGTCCACCTTACCTCCTCAGCCTGGATCCCTGCAATCTCCAGCTCTAGAGAGGCACTGAACAGGGGTGTTtacaaagctttaaaatgtaatctttgtGCAATATTGAAAAATGTCGATTAAAgcttgaaaaaacatttaaaa

Function

NR:

description
PREDICTED: leucine-rich repeat flightless-interacting protein 2-like isoform X16

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000760 True 6904 mRNA 0.50 23 2423045 2462484

Neighbor

gene id symbol gene type direction distance location
AMCG00000761 NA coding upstream 32582 2389675 ~ 2390463 (+)
AMCG00000762 NA coding upstream 41035 2345321 ~ 2382010 (+)
AMCG00000758 cops8,LOC106581673,LOC103132569 coding upstream 196684 2213649 ~ 2226361 (+)
AMCG00000753 NA coding upstream 264319 2157641 ~ 2158726 (+)
AMCG00000752 agap1,LOC106575763 coding upstream 368511 2053187 ~ 2054534 (+)
AMCG00000764 dnah7 coding downstream 4878 2467362 ~ 2519028 (+)
AMCG00000766 tmeff2,LOC106581686 coding downstream 498005 2960489 ~ 2977911 (+)
AMCG00000769 tmeff2a,tmeff2,LOC107670719,LOC107728299 coding downstream 534029 2996513 ~ 3011360 (+)
AMCG00000768 NA coding downstream 562034 3024518 ~ 3037733 (+)
AMCG00000767 NA coding downstream 593938 3056422 ~ 3061712 (+)
G125955 NA non-coding upstream 129173 2291835 ~ 2293872 (+)
G125756 NA non-coding upstream 801157 1617808 ~ 1621888 (+)
G125767 NA non-coding upstream 813835 1594823 ~ 1609210 (+)
G125736 NA non-coding upstream 996102 1426633 ~ 1426943 (+)
G125713 NA non-coding upstream 1094406 1323503 ~ 1328639 (+)
G126036 NA non-coding downstream 95508 2557992 ~ 2558257 (+)
G126044 NA non-coding downstream 303771 2766255 ~ 2766539 (+)
G126050 NA non-coding downstream 408432 2870916 ~ 2885184 (+)
G126054 NA non-coding downstream 547759 3010243 ~ 3068463 (+)
G126068 NA non-coding downstream 619262 3081746 ~ 3083587 (+)
AMCG00000734 NA other upstream 608888 1805407 ~ 1814157 (+)
AMCG00000729 satb2,LOC107690605,LOC107569722 other upstream 724472 1668845 ~ 1698573 (+)
AMCG00000723 crygs,LOC107756035,LOC107663530,LOC105911960,LOC103033891 other upstream 817014 1599696 ~ 1606031 (+)
G125561 NA other upstream 2019454 339640 ~ 403591 (+)
AMCG00000848 NA other downstream 2998817 5461301 ~ 5465981 (+)
G127134 NA other downstream 6154715 8617199 ~ 8620195 (+)
AMCG00000949 NA other downstream 7637799 10100283 ~ 10154187 (+)
AMCG00001002 myo3b other downstream 9537180 11999664 ~ 12011425 (+)
AMCG00001022 NA other downstream 9826466 12288950 ~ 12385042 (+)

Expression


Co-expression Network