AMCG00000769 (tmeff2a,tmeff2,LOC107670719,LOC107728299)


Basic Information

Item Value
gene id AMCG00000769
gene name tmeff2a,tmeff2,LOC107670719,LOC107728299
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 2996513 ~ 3011360 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000769
AGATTGAGACGTCGGCTGCCCGTCTCTCTGTGTCGCACGGATGTGCTCCTGTCGGCGTGTGCCGTGACCGGAGCGTTTCTCTATGTTTCTGCAGGGGCAGAGGGCTCTGGGGAGACTAGCCAGAAGGAGACCTCCACCTGTGACATCTGTCAGTTCGGGGCTGAGTGCGACGAGGACGCGGAGGATGTGTGgtgtgtgtgtaacatCGACTGCTCACACATCAGCTTCAACCCGGTCTGCGCCTCCGACGGCAAGTCCTACGACAACCCCTGTCAGGTGAAGGAGGCCTCGTGTCAGAAGCAGGAGCGCATCGAGGTCAAGTACCTGGGACACTGCCAAGATGACACGAACACGGGGGCAAAGTCCGGGGACGGGCATTACGCGAGAACGGACTACACAGAGGAGAACGCGAACAAACTGGAGGAGTCGGCGCGAGGACTGTACATCCCCTGTCCGGAGCACTACAAGAACTACTGCGTCCACGGCAACTGCGAGTACCCCAGCGGGATGCTGCCCCCTTCCTGCAGGTGTGACACGGGCTTCAGTGGGCCGCAGTGCGACACCAAGGAGTACAACGTGCTGTATGTGGTGCCGGGCTCAGGGAAGCTGCGATACGTCCTCATCGCCTCGATCATCGGAGCCGTGCAGGTGGCCATCATCTGCGTGGTGGTGCTGTGCATAACACGGAAATGCCCTCGGAGCAACAGGATAAACCGACAGAAACAAAACGCGACACACTACAGCTCGGAAAACACGATGCGCGCGGCGACCCGGCTGATC

Function

symbol description
tmeff2a Predicted to be an extracellular matrix structural constituent. Predicted to be involved in several processes, including basement membrane assembly; cell migration; and substrate adhesion-dependent cell spreading. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of laminin complex. Human ortholog(s) of this gene implicated in prostate cancer and urinary bladder cancer. Orthologous to human TMEFF2 (transmembrane protein with EGF like and two follistatin like domains 2).
tmeff2 Acts upstream of or within negative regulation of cell migration; negative regulation of cellular component organization; and wound healing, spreading of cells. Predicted to be located in extracellular region. Predicted to be active in basement membrane and plasma membrane. Implicated in prostate cancer and urinary bladder cancer. Biomarker of prostate cancer.

NR:

description
tomoregulin-2

GO: NA

KEGG:

id description
K23608 TMEFF2; tomoregulin-2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000769 True 780 mRNA 0.60 6 2996513 3011360

Neighbor

gene id symbol gene type direction distance location
AMCG00000766 tmeff2,LOC106581686 coding upstream 18602 2960489 ~ 2977911 (+)
AMCG00000764 dnah7 coding upstream 477485 2467362 ~ 2519028 (+)
AMCG00000760 LOC106581656 coding upstream 534029 2423045 ~ 2462484 (+)
AMCG00000761 NA coding upstream 606050 2389675 ~ 2390463 (+)
AMCG00000762 NA coding upstream 614503 2345321 ~ 2382010 (+)
AMCG00000768 NA coding downstream 13158 3024518 ~ 3037733 (+)
AMCG00000767 NA coding downstream 45062 3056422 ~ 3061712 (+)
AMCG00000774 hspd1 coding downstream 110988 3122348 ~ 3133195 (+)
AMCG00000772 sf3b1,LOC107731751,LOC106586372 coding downstream 130897 3142257 ~ 3155509 (+)
AMCG00000773 NA coding downstream 147056 3158416 ~ 3181118 (+)
G126050 NA non-coding upstream 111329 2870916 ~ 2885184 (+)
G126044 NA non-coding upstream 229974 2766255 ~ 2766539 (+)
G126036 NA non-coding upstream 438256 2557992 ~ 2558257 (+)
G125986 NA non-coding upstream 475928 2427670 ~ 2520585 (+)
G125955 NA non-coding upstream 702641 2291835 ~ 2293872 (+)
G126068 NA non-coding downstream 70386 3081746 ~ 3083587 (+)
G126215 NA non-coding downstream 544206 3555566 ~ 3558424 (+)
G126240 NA non-coding downstream 641313 3652673 ~ 3656581 (+)
G126248 NA non-coding downstream 659442 3670802 ~ 3673176 (+)
G126301 NA non-coding downstream 714560 3725920 ~ 3730056 (+)
AMCG00000734 NA other upstream 1182356 1805407 ~ 1814157 (+)
AMCG00000729 satb2,LOC107690605,LOC107569722 other upstream 1297940 1668845 ~ 1698573 (+)
AMCG00000723 crygs,LOC107756035,LOC107663530,LOC105911960,LOC103033891 other upstream 1390482 1599696 ~ 1606031 (+)
G125561 NA other upstream 2592922 339640 ~ 403591 (+)
AMCG00000848 NA other downstream 2449941 5461301 ~ 5465981 (+)
G127134 NA other downstream 5605839 8617199 ~ 8620195 (+)
AMCG00000949 NA other downstream 7088923 10100283 ~ 10154187 (+)
AMCG00001002 myo3b other downstream 8988304 11999664 ~ 12011425 (+)
AMCG00001022 NA other downstream 9277590 12288950 ~ 12385042 (+)

Expression


Co-expression Network